CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MDP0000205637 *(Malus domestica)* MADS box
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00319 (SRF-TF)	IPR002100	MDP0000205637	T258681_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Q9ATE8_PETHY M11011_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP21_01	0.854	0.854
Q40591_TOBAC M11002_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS1_03	0.854	0.854
Q9ATE3_PETHY M11008_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP28_01	0.833	0.833
MADS50 M10968_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS50_01	0.833	0.833
AGL6 M06986_2.00	Arabidopsis thaliana	TTWCCHAAAAWRGWAANWW	WWNTTWCYWTTTTDGGWAA	Dap-seq OMalley et al.(2016) AGL6_col_a	0.812	0.812
SOC1 M08425_2.00	Arabidopsis thaliana	CCAAAAAWRGAAAND	HNTTTCYWTTTTTGG	ChIP-chip Mathelier et al.(2014) MA0554.1	0.812	0.812
SOC1 M10915_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL20_01	0.812	0.812
Q9ATE9_PETHY M11012_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP20_01	0.812	0.812
MAD17_ORYSJ M10961_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS17_01	0.812	0.812
MADS6 M10967_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS6_01	0.812	0.812
SEP1 M02696_2.00	Arabidopsis thaliana	NDWNCCAWWWWTRGHAWB	VWTDCYAWWWWTGGNWHN	SELEX Mathelier et al.(2014) MA0584.1	0.792	0.792
SEP3 M08143_2.00	Arabidopsis thaliana	CCAAAAAWRGN	NCYWTTTTTGG	ChIP-seq Mathelier et al.(2014) MA0563.1	0.792	0.792
SEP1 M10929_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL2_01	0.792	0.792
SEP1 M10930_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL2_02	0.792	0.792
SEP3 M10902_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL9_01	0.792	0.792
AGL9_PETHY M10993_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP2_01	0.792	0.792
Q9ATE7_PETHY M11010_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP22_01	0.792	0.792
Q9ATE6_PETHY M11009_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP23_01	0.792	0.792
Q9ATF3_PETHY M11015_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP4_01	0.792	0.792
Q9ATF1_PETHY M11013_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP9_01	0.792	0.792
O82084_MALDO M11018_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS1_01	0.792	0.792
O82699_MALDO M11022_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS11_01	0.792	0.792
Q6UGQ8_PETHY M11005_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS12_01	0.792	0.792
Q9ST54_MALDO M11029_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_04	0.792	0.792
O82697_MALDO M11020_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS7_01	0.792	0.792
MADS7 M10975_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS7_02	0.792	0.792
MADS8 M10976_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS8_01	0.792	0.792
Q9SBA6_MALDO M11028_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS8_02	0.792	0.792
AGL13 M06989_2.00	Arabidopsis thaliana	WTWCYHAAAAWRGWAADW	WHTTWCYWTTTTDRGWAW	Dap-seq OMalley et al.(2016) AGL13_col_b	0.771	0.771
AGL3 M02693_2.00	Arabidopsis thaliana	VDWNCCAWWWWWRGNWNN	NNWNCYWWWWWTGGNWHB	SELEX Mathelier et al.(2014) MA0001.2	0.771	0.771
AGL1 M02694_2.00	Arabidopsis thaliana	NDTDCCWWWWNDGGWAHN	NDTWCCHNWWWWGGHAHN	SELEX Mathelier et al.(2014) MA0585.1	0.771	0.771
AGL1 M10920_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL1_01	0.771	0.771
AGL1 M10921_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL1_02	0.771	0.771
AGL3 M10908_2.00	Arabidopsis thaliana	VDWNCCAWWWWWRGNWNN	NNWNCYWWWWWTGGNWHB	Transfac Matys et al.(2006) P$AGL3_01	0.771	0.771
AGL3 M10909_2.00	Arabidopsis thaliana	NDTNCCAWWWWTRGHWNN	NNWDCYAWWWWTGGNAHN	Transfac Matys et al.(2006) P$AGL3_02	0.771	0.771
AGL3 M10910_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL3_03	0.771	0.771
Q9LEH9_HORVU M10983_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM9_01	0.771	0.771
Q9ATF2_PETHY M11014_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP5_01	0.771	0.771
MAD14_ORYSJ M10960_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS14_01	0.771	0.771
Q9LM09_TOBAC M11016_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS4_01	0.771	0.771
MADS5 M10970_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS5_02	0.771	0.771
SHP2 M10914_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$SHP2_01	0.771	0.771
Q84LI3_WHEAT M10979_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TAVRT1_01	0.771	0.771
O82128_WHEAT M10965_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WAP1_01	0.771	0.771
AGL15 M06992_2.00	Arabidopsis thaliana	WNTTWCCHAAWDWRGAAAN	NTTTCYWHWTTDGGWAANW	Dap-seq OMalley et al.(2016) AGL15_col_a	0.750	0.750
AGL15 M06993_2.00	Arabidopsis thaliana	DNTTWCCHAAWDDRGAAANHH	DDNTTTCYHHWTTDGGWAANH	Dap-seq OMalley et al.(2016) AGL15_colamp_a	0.750	0.750
AGL42 M06995_2.00	Arabidopsis thaliana	RATGATG	CATCATY	Dap-seq OMalley et al.(2016) AGL42_col_a	0.750	0.750
AGL15 M10927_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_01	0.750	0.750
AGL15 M10928_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL15_02	0.750	0.750
SEP2 M10916_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AGL4_01	0.750	0.750
Q9LEI3_HORVU M10985_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM3_01	0.750	0.750
Q9LEI1_HORVU M10984_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM7_01	0.750	0.750
MADS1 M10969_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS1_02	0.750	0.750
Solyc05g012020.2 M10986_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_01	0.750	0.750
Solyc05g012020.2 M10987_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_Q2_01	0.750	0.750
Solyc05g012020.2 M10988_2.00	Solanum lycopersicum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$RIN_Q2	0.750	0.750
squamosa M02697_2.00	Antirrhinum majus	MYAWAWAWRGHAAN	NTTDCYWTWTWTRK	SELEX Mathelier et al.(2014) MA0082.1	0.729	0.729
AG M02695_2.00	Arabidopsis thaliana	HTTWCCWWAWNDGGHADN	NHTDCCHNWTWWGGWAAD	SELEX Mathelier et al.(2014) MA0005.2	0.729	0.729
AP1 M08144_2.00	Arabidopsis thaliana	MYAAAAAWRGAAA	TTTCYWTTTTTRK	ChIP-seq Mathelier et al.(2014) MA0940.1	0.729	0.729
AG M10923_2.00	Arabidopsis thaliana	HTTWCCWWAWNDGGHWDN	NHTDCCHNWTWWGGWAAD	Transfac Matys et al.(2006) P$AG_01	0.729	0.729
AG M10924_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_02	0.729	0.729
AG M10925_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_03	0.729	0.729
AG_TOBAC M10995_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG1_02	0.729	0.729
AG M10926_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AG_Q2	0.729	0.729
Q9ATE2_PETHY M11007_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP29_01	0.729	0.729
Q08711_PETHY M10999_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$FBP6_01	0.729	0.729
Q7X9I6_MALDO M11023_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS12_02	0.729	0.729
Q8VWZ3_MALDO M11025_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS14_02	0.729	0.729
Q8VWZ2_MALDO M11024_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS15_02	0.729	0.729
MADS18 M10973_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS18_01	0.729	0.729
Q9ZRA5_MALDO M11030_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS2_04	0.729	0.729
MADS3_ORYSJ M10963_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_01	0.729	0.729
AG_PETHY M10994_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_02	0.729	0.729
AP1 M10905_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADSA_Q2	0.729	0.729
Q38742_ANTMA M11000_2.00	Antirrhinum majus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$SQUA_01	0.729	0.729
SVP M06984_2.00	Arabidopsis thaliana	DDCCVAAWANGGHAA	TTDCCNTWTTBGGHH	Dap-seq OMalley et al.(2016) SVP_colamp_v3b	0.708	0.708
SVP M06985_2.00	Arabidopsis thaliana	CCMAAWANGGWAANW	WNTTWCCNTWTTKGG	Dap-seq OMalley et al.(2016) SVP_col_v3b	0.708	0.708
SVP M08424_2.00	Arabidopsis thaliana	NWWHCCMAAAADGGAAARHH	DDYTTTCCHTTTTKGGDWWN	ChIP-chip Mathelier et al.(2014) MA0555.1	0.708	0.708
MLOC_61901 M10964_2.00	Hordeum vulgare	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BM8_01	0.708	0.708
O82698_MALDO M11021_2.00	Malus domestica	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS10_01	0.708	0.708
Q8GT99_TOBAC M11006_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS11_02	0.708	0.708
MADS15 M10972_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS15_01	0.708	0.708
MADS2 M10966_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS2_02	0.708	0.708
Q9FR84_MAIZE M10981_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MADS3_03	0.708	0.708
Q9SBQ1_PETHY M11017_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PFG_01	0.708	0.708
Q41829_MAIZE M10977_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ZAP1_02	0.708	0.708
For this family, TFs with SR scores > 0.700* will likely have a similar motif*