CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10002350m.g
(
Eutrema salsugineum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Thhalv10002350m.g
T259097_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AGL80
M06994_2.00
Arabidopsis thaliana
TCACCA
TGGTGA
Dap-seq
OMalley et al.(2016)
FEM111_col_a
0.756
0.756
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10002350m
MADS box
10
55
FIENNSSRKATFQKRKKGILKKVKEISTLCGVTACAIIYSPYTSNP
Links
Other
MADS box
family TFs
Other
Eutrema salsugineum
TFs
39 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACLA_007900
Aspergillus clavatus
CADACLAG00000690
N
Pc16g10860
Penicillium chrysogenum
Pc16g10860
N
PCH_Pc16g10860
Penicillium rubens
PCH_Pc16g10860
N
S40288_04526
Stachybotrys chartarum
S40288_04526
N
U727_00431181161
Penicillium solitum
U727_00431181161
N