CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10015661m.g
(
Eutrema salsugineum
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Thhalv10015661m.g
T259140_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10015661m
MADS box
10
54
RITNEKTRITTYRKRKLCLYKKAKEFSTLCGVKTCLIVYGPSRAG
Links
Other
MADS box
family TFs
Other
Eutrema salsugineum
TFs
14 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAI24873
Xenopus laevis
AAI24873
I
0.000
Aan_R012074
Calypte anna
Aan_R012074
I
0.000
Alligator_sinensis_CCG001450.1
Alligator sinensis
Alligator_sinensis_CCG001450.1
I
0.000
Aqu1.223978
Amphimedon queenslandica
Aqu1.223978
I
0.000
A_02727
Schistosoma haematobium
A_02727
I
0.000
BGLB002288
Biomphalaria glabrata
BGLB002288
I
0.000
Brh_R010065
Buceros rhinoceros
Brh_R010065
I
0.000
CapteG137131
Capitella teleta
CapteG137131
I
0.000
CGI_10019731
Crassostrea gigas
CGI_10019731
I
0.000
Cmyd_10014159
Chelonia mydas
Cmyd_10014159
I
0.000
DRE_01381
Drechslerella stenobrocha
DRE_01381
I
0.000
FOXJ2
Anolis carolinensis
ENSACAG00000011293
I
0.000
ENSAMEG00000000591
Ailuropoda melanoleuca
ENSAMEG00000000591
I
0.000
ENSAMEG00000017023
Ailuropoda melanoleuca
ENSAMEG00000017023
I
0.000
ENSAMXG00000016940
Astyanax mexicanus
ENSAMXG00000016940
I
0.000
ENSAPLG00000013506
Anas platyrhynchos
ENSAPLG00000013506
I
0.000
FOXJ3
Bos taurus
ENSBTAG00000015887
I
0.000
FOXJ2
Bos taurus
ENSBTAG00000019742
I
0.000
ENSBTAP00000053827-D1
Bos grunniens
ENSBTAP00000053827-D1
I
0.000
FOXJ3
Canis familiaris
ENSCAFG00000002563
I
0.000
FOXJ2
Canis familiaris
ENSCAFG00000025515
I
0.000
FOXJ3
Choloepus hoffmanni
ENSCHOG00000003931
I
0.000
FOXJ2
Choloepus hoffmanni
ENSCHOG00000011561
I
0.000
ENSCING00000001086
Ciona intestinalis
ENSCING00000001086
I
0.000
FOXJ3
Callithrix jacchus
ENSCJAG00000003088
I
0.000
FOXJ2
Callithrix jacchus
ENSCJAG00000018955
I
0.000
ENSCPOG00000024703
Cavia porcellus
ENSCPOG00000024703
I
0.000
ENSCPOG00000027484
Cavia porcellus
ENSCPOG00000027484
I
0.000
ENSCSAG00000001162
Chlorocebus sabaeus
ENSCSAG00000001162
I
0.000
ENSCSAG00000009745
Chlorocebus sabaeus
ENSCSAG00000009745
I
0.000
ENSCSAVG00000001472
Ciona savignyi
ENSCSAVG00000001472
I
0.000
foxj3
Danio rerio
ENSDARG00000075774
I
0.000
FOXJ2
Dasypus novemcinctus
ENSDNOG00000001703
I
0.000
FOXJ3
Dasypus novemcinctus
ENSDNOG00000008585
I
0.000
Foxj3
Dipodomys ordii
ENSDORG00000015838
I
0.000
FOXJ3
Equus caballus
ENSECAG00000008665
I
0.000
FOXJ2
Equus caballus
ENSECAG00000020237
I
0.000
FOXJ3
Echinops telfairi
ENSETEG00000014454
I
0.000
ENSFALG00000007244
Ficedula albicollis
ENSFALG00000007244
I
0.000
FOXJ2
Felis catus
ENSFCAG00000002323
I
0.000
FOXJ3
Felis catus
ENSFCAG00000026568
I
0.000
FOXJ2
Homo sapiens
ENSG00000065970
D
0.000
FOXJ3
Homo sapiens
ENSG00000198815
D
0.000
FOXJ3
Gasterosteus aculeatus
ENSGACG00000006756
I
0.000
foxj3
Gasterosteus aculeatus
ENSGACG00000007398
I
0.000
FOXJ2
Gallus gallus
ENSGALG00000014329
I
0.000
FOXJ3
Gorilla gorilla
ENSGGOG00000013618
I
0.000
ENSGMOG00000001764
Gadus morhua
ENSGMOG00000001764
I
0.000
ENSGMOG00000015938
Gadus morhua
ENSGMOG00000015938
I
0.000
ENSLACG00000008649
Latimeria chalumnae
ENSLACG00000008649
I
0.000
ENSLACG00000010048
Latimeria chalumnae
ENSLACG00000010048
I
0.000
FOXJ2
Loxodonta africana
ENSLAFG00000002976
I
0.000
FOXJ3
Loxodonta africana
ENSLAFG00000017663
I
0.000
ENSLOCG00000001575
Lepisosteus oculatus
ENSLOCG00000001575
I
0.000
ENSMEUG00000005169
Macropus eugenii
ENSMEUG00000005169
I
0.000
ENSMEUG00000008330
Macropus eugenii
ENSMEUG00000008330
I
0.000
FOXJ2
Meleagris gallopavo
ENSMGAG00000013934
I
0.000
ENSMICG00000010441
Microcebus murinus
ENSMICG00000010441
I
0.000
FOXJ2
Myotis lucifugus
ENSMLUG00000004866
I
0.000
FOXJ3
Myotis lucifugus
ENSMLUG00000005770
I
0.000
FOXJ3
Macaca mulatta
ENSMMUG00000014138
I
0.000
FOXJ3
Monodelphis domestica
ENSMODG00000017320
I
0.000
FOXJ2
Monodelphis domestica
ENSMODG00000017974
I
0.000
ENSMPUG00000014045
Mustela putorius furo
ENSMPUG00000014045
I
0.000
ENSMPUG00000016740
Mustela putorius furo
ENSMPUG00000016740
I
0.000
Foxj2
Mus musculus
ENSMUSG00000003154
D
0.000
Foxj3
Mus musculus
ENSMUSG00000032998
D
0.000
ENSNLEG00000001730
Nomascus leucogenys
ENSNLEG00000001730
I
0.000
ENSNLEG00000012288
Nomascus leucogenys
ENSNLEG00000012288
I
0.000
ENSOANG00000005941
Ornithorhynchus anatinus
ENSOANG00000005941
I
0.000
ENSOANG00000009728
Ornithorhynchus anatinus
ENSOANG00000009728
I
0.000
ENSOARG00000002389
Ovis aries
ENSOARG00000002389
I
0.000
ENSOARG00000020401
Ovis aries
ENSOARG00000020401
I
0.000
FOXJ2
Oryctolagus cuniculus
ENSOCUG00000004313
I
0.000
FOXJ3
Oryctolagus cuniculus
ENSOCUG00000011647
I
0.000
FOXJ2
Otolemur garnettii
ENSOGAG00000029902
I
0.000
ENSONIG00000002167
Oreochromis niloticus
ENSONIG00000002167
I
0.000
ENSONIG00000003923
Oreochromis niloticus
ENSONIG00000003923
I
0.000
FOXJ3
Ochotona princeps
ENSOPRG00000003174
I
0.000
FOXJ2
Ochotona princeps
ENSOPRG00000015650
I
0.000
ENSORLG00000003992
Oryzias latipes
ENSORLG00000003992
I
0.000
FOXJ3
Oryzias latipes
ENSORLG00000004623
I
0.000
ENSP00000162391
Macaca fascicularis
ENSP00000162391
I
0.000
ENSP00000162391-D1
Bos grunniens
ENSP00000162391-D1
I
0.000
ENSP00000361654
Macaca fascicularis
ENSP00000361654
I
0.000
ENSPANG00000004657
Papio anubis
ENSPANG00000004657
I
0.000
ENSPANG00000019708
Papio anubis
ENSPANG00000019708
I
0.000
FOXJ2
Procavia capensis
ENSPCAG00000002771
I
0.000
ENSPFOG00000009113
Poecilia formosa
ENSPFOG00000009113
I
0.000
ENSPFOG00000014598
Poecilia formosa
ENSPFOG00000014598
I
0.000
ENSPMAG00000002637
Petromyzon marinus
ENSPMAG00000002637
I
0.000
ENSPPYG00000001472
Pongo abelii
ENSPPYG00000001472
I
0.000
ENSPPYG00000004236
Pongo abelii
ENSPPYG00000004236
I
0.000
ENSPSIG00000010988
Pelodiscus sinensis
ENSPSIG00000010988
I
0.000
FOXJ3
Pan troglodytes
ENSPTRG00000000606
I
0.000
FOXJ2
Pan troglodytes
ENSPTRG00000004629
I
0.000
FOXJ3
Pteropus vampyrus
ENSPVAG00000005491
I
0.000
FOXJ2
Pteropus vampyrus
ENSPVAG00000006794
I
0.000
Foxj2
Rattus norvegicus
ENSRNOG00000009000
I
0.000
Foxj3
Rattus norvegicus
ENSRNOG00000061851
I
0.000
ENSSHAG00000012097
Sarcophilus harrisii
ENSSHAG00000012097
I
0.000
ENSSHAG00000017137
Sarcophilus harrisii
ENSSHAG00000017137
I
0.000
ENSSTOG00000011045
Ictidomys tridecemlineatus
ENSSTOG00000011045
I
0.000
FOXJ3
Tupaia belangeri
ENSTBEG00000013462
I
0.000
FOXJ2
Tupaia belangeri
ENSTBEG00000015045
I
0.000
FOXJ2
Taeniopygia guttata
ENSTGUG00000013133
I
0.000
FOXJ3
Tetraodon nigroviridis
ENSTNIG00000007159
I
0.000
foxj3
Tetraodon nigroviridis
ENSTNIG00000014781
I
0.000
FOXJ3
Takifugu rubripes
ENSTRUG00000014404
I
0.000
foxj3
Takifugu rubripes
ENSTRUG00000014515
I
0.000
FOXJ3
Tursiops truncatus
ENSTTRG00000003605
I
0.000
FOXJ2
Tursiops truncatus
ENSTTRG00000014227
I
0.000
FOXJ3
Vicugna pacos
ENSVPAG00000005858
I
0.000
ENSXMAG00000016662
Xiphophorus maculatus
ENSXMAG00000016662
I
0.000
ENSXMAG00000017058
Xiphophorus maculatus
ENSXMAG00000017058
I
0.000
e_gw.96.126.1
Branchiostoma floridae
e_gw.96.126.1
I
0.000
GA11206
Drosophila pseudoobscura
FBgn0071260
I
0.000
GF24569
Drosophila ananassae
FBgn0101563
I
0.000
GM24770
Drosophila sechellia
FBgn0179633
I
0.000
GD12820
Drosophila simulans
FBgn0184546
I
0.000
GJ11303
Drosophila virilis
FBgn0198564
I
0.000
Gfo_R008430
Geospiza fortis
Gfo_R008430
I
0.000
H072_3220
Dactylellina haptotyla
H072_3220
I
0.000
ISCW017832
Ixodes scapularis
ISCW017832
I
0.000
L798_01618
Zootermopsis nevadensis
L798_01618
I
0.000
LotgiG98413
Lottia gigantea
LotgiG98413
I
0.000
ML23712a
Mnemiopsis leidyi
ML23712a
I
0.000
Myotis_brandtii_FOXJ2_10003269
Myotis brandtii
Myotis_brandtii_FOXJ2_10003269
I
0.000
Myotis_brandtii_FOXJ3_10016772
Myotis brandtii
Myotis_brandtii_FOXJ3_10016772
I
0.000
NEMVEDRAFT_v1g120142
Nematostella vectensis
NEMVEDRAFT_v1g120142
I
0.000
Ogr09575
Ophisaurus gracilis
Ogr09575
I
0.000
PDE_05162
Penicillium oxalicum
PDE_05162
I
0.000
PNEG_01841
Pneumocystis murina
PNEG_01841
I
0.000
Pvit_11773
Pogona vitticeps
Pvit_11773
I
0.000
RO3G_14601
Rhizopus oryzae
RO3G_14601
I
0.000
RO3G_16764
Rhizopus oryzae
RO3G_16764
I
0.000
RPRC000133
Rhodnius prolixus
RPRC000133
I
0.000
Sakowv30013869m.g
Saccoglossus kowalevskii
Sakowv30013869m.g
I
0.000
SCUD_0000143501
Schistosoma curassoni
SCUD_0000143501
I
0.000
Sjc_0002220
Schistosoma japonicum
Sjc_0002220
I
0.000
SMAR009566
Strigamia maritima
SMAR009566
I
0.000
Smp_155010
Schistosoma mansoni
Smp_155010
I
0.000
SMRZ_0001806201
Schistosoma margrebowiei
SMRZ_0001806201
I
0.000
SPPG_02883
Spizellomyces punctatus
SPPG_02883
I
0.000
SPU_007644
Strongylocentrotus purpuratus
SPU_007644
D
0.000
SPU_011635
Strongylocentrotus purpuratus
SPU_011635
I
0.000
SROB_0001165901
Schistosoma rodhaini
SROB_0001165901
I
0.000
Tal_R003697
Tyto alba
Tal_R003697
I
0.000
foxj3
Xenopus tropicalis
XB-GENE-481185
I
0.000
foxj2
Xenopus tropicalis
XB-GENE-483646
I
0.000
foxj2.L
Xenopus laevis
XB-GENE-865002
I
0.000