Thhalv10019516m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10019516m.g T259154_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10019516m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG000360.1 Alligator sinensis Alligator_sinensis_CCG000360.1 N
Cflo_09545--XP_001122634.1_APIME Camponotus floridanus Cflo_09545--XP_001122634.1_APIME N
CLEC008013 Cimex lectularius CLEC008013 N
Cmyd_10002800 Chelonia mydas Cmyd_10002800 N
Cmyd_10009563 Chelonia mydas Cmyd_10009563 N
TCF15 Anolis carolinensis ENSACAG00000011172 N
SCX Anolis carolinensis ENSACAG00000012688 N
ENSAMXG00000001669 Astyanax mexicanus ENSAMXG00000001669 N
ENSAMXG00000002921 Astyanax mexicanus ENSAMXG00000002921 N
ENSAMXG00000012951 Astyanax mexicanus ENSAMXG00000012951 N
ENSAPLG00000008246 Anas platyrhynchos ENSAPLG00000008246 N
TCF15 Bos taurus ENSBTAG00000005750 N
SCX Bos taurus ENSBTAG00000009816 N
TCF15 Canis familiaris ENSCAFG00000006930 N
TCF15 Callithrix jacchus ENSCJAG00000020866 N
SCX Cavia porcellus ENSCPOG00000022112 N
ENSCSAG00000008646 Chlorocebus sabaeus ENSCSAG00000008646 N
ENSCSAG00000010467 Chlorocebus sabaeus ENSCSAG00000010467 N
scxb Danio rerio ENSDARG00000011635 N
scxa Danio rerio ENSDARG00000035695 N
TCF15 Danio rerio ENSDARG00000042857 N
tcf15 Danio rerio ENSDARG00000067544 N
TCF15 Dasypus novemcinctus ENSDNOG00000045300 N
ENSDORG00000013778 Dipodomys ordii ENSDORG00000013778 N
TCF15 Equus caballus ENSECAG00000002411 N
TCF15 Erinaceus europaeus ENSEEUG00000007767 N
TCF15 Echinops telfairi ENSETEG00000009717 N
ENSFALG00000000366 Ficedula albicollis ENSFALG00000000366 N
ENSFALG00000005713 Ficedula albicollis ENSFALG00000005713 N
SCX Felis catus ENSFCAG00000026245 N
TCF15 Homo sapiens ENSG00000125878 N
SCX Homo sapiens ENSG00000260428 N
scxa Gasterosteus aculeatus ENSGACG00000005863 N
TCF15 Gasterosteus aculeatus ENSGACG00000011390 N
tcf15 Gasterosteus aculeatus ENSGACG00000011799 N
TCF15 Gallus gallus ENSGALG00000026276 N
ENSGMOG00000015981 Gadus morhua ENSGMOG00000015981 N
ENSGMOG00000017351 Gadus morhua ENSGMOG00000017351 N
ENSGMOG00000019517 Gadus morhua ENSGMOG00000019517 N
ENSLACG00000000721 Latimeria chalumnae ENSLACG00000000721 N
ENSLACG00000001591 Latimeria chalumnae ENSLACG00000001591 N
ENSLACG00000014122 Latimeria chalumnae ENSLACG00000014122 N
TCF15 Loxodonta africana ENSLAFG00000001884 N
ENSLOCG00000001058 Lepisosteus oculatus ENSLOCG00000001058 N
ENSLOCG00000002219 Lepisosteus oculatus ENSLOCG00000002219 N
ENSLOCG00000007444 Lepisosteus oculatus ENSLOCG00000007444 N
ENSMEUG00000000468 Macropus eugenii ENSMEUG00000000468 N
TCF15 Meleagris gallopavo ENSMGAG00000007877 N
TCF15 Microcebus murinus ENSMICG00000004647 N
TCF15 Myotis lucifugus ENSMLUG00000014021 N
TCF15 Macaca mulatta ENSMMUG00000022546 N
TCF15 Monodelphis domestica ENSMODG00000019526 N
Scx Mus musculus ENSMUSG00000034161 N
Tcf15 Mus musculus ENSMUSG00000068079 N
ENSNLEG00000009426 Nomascus leucogenys ENSNLEG00000009426 N
ENSOARG00000019015 Ovis aries ENSOARG00000019015 N
TCF15 Oryctolagus cuniculus ENSOCUG00000000528 N
TCF15 Otolemur garnettii ENSOGAG00000015444 N
SCX Otolemur garnettii ENSOGAG00000028494 N
ENSONIG00000003151 Oreochromis niloticus ENSONIG00000003151 N
ENSONIG00000007265 Oreochromis niloticus ENSONIG00000007265 N
ENSONIG00000012261 Oreochromis niloticus ENSONIG00000012261 N
ENSONIG00000016756 Oreochromis niloticus ENSONIG00000016756 N
TCF15 Ochotona princeps ENSOPRG00000005163 N
scxa Oryzias latipes ENSORLG00000006041 N
tcf15 Oryzias latipes ENSORLG00000015082 N
ENSP00000246080-D1 Bos grunniens ENSP00000246080-D1 N
ENSPANG00000013449 Papio anubis ENSPANG00000013449 N
ENSPANG00000017828 Papio anubis ENSPANG00000017828 N
ENSPFOG00000005929 Poecilia formosa ENSPFOG00000005929 N
ENSPFOG00000007762 Poecilia formosa ENSPFOG00000007762 N
ENSPFOG00000018890 Poecilia formosa ENSPFOG00000018890 N
ENSPPYG00000018968 Pongo abelii ENSPPYG00000018968 N
SCX Pteropus vampyrus ENSPVAG00000009266 N
TCF15 Pteropus vampyrus ENSPVAG00000012767 N
Tcf15 Rattus norvegicus ENSRNOG00000000012 N
Scx Rattus norvegicus ENSRNOG00000021812 N
ENSSHAG00000007757 Sarcophilus harrisii ENSSHAG00000007757 N
ENSSSCG00000007202 Sus scrofa ENSSSCG00000007202 N
TCF15 Taeniopygia guttata ENSTGUG00000006794 N
tcf15 Tetraodon nigroviridis ENSTNIG00000012471 N
scxa Tetraodon nigroviridis ENSTNIG00000019087 N
ENSTRUG00000005875 Takifugu rubripes ENSTRUG00000005875 N
tcf15 Takifugu rubripes ENSTRUG00000007678 N
scxa Takifugu rubripes ENSTRUG00000017355 N
SCX Tursiops truncatus ENSTTRG00000006425 N
TCF15 Tursiops truncatus ENSTTRG00000007058 N
ENSXMAG00000008863 Xiphophorus maculatus ENSXMAG00000008863 N
ENSXMAG00000011591 Xiphophorus maculatus ENSXMAG00000011591 N
Gfo_R005304 Geospiza fortis Gfo_R005304 N
NV13064 Nasonia vitripennis NV13064 N
Ogr05722 Ophisaurus gracilis Ogr05722 N
Ogr14597 Ophisaurus gracilis Ogr14597 N
Pvit_17687 Pogona vitticeps Pvit_17687 N
Pvit_18729 Pogona vitticeps Pvit_18729 N
TC015754 Tribolium castaneum TC015754 N
tcf15 Xenopus tropicalis XB-GENE-488935 N
tcf15.L Xenopus laevis XB-GENE-6252545 N
scx Xenopus tropicalis XB-GENE-939816 N
XP_002937913 Xenopus tropicalis XP_002937913 N
YQE_10857 Dendroctonus ponderosae YQE_10857 N