Thhalv10023871m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10023871m.g T259181_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL55
M06983_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
AGL55_col_a 		0.729 0.729
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10023871m MADS box 12 64

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACLA_082010 Aspergillus clavatus CADACLAG00007864 I 0.000
AFUA_6G10010 Aspergillus fumigatus CADAFUAG00002152 I 0.000
CADANGAG00008866 Aspergillus niger CADANGAG00008866 I 0.000
ANIA_02122 Aspergillus nidulans CADANIAG00010526 D 0.000
NFIA_072830 Neosartorya fischeri CADNFIAG00008162 N 0.000
CHGG_03691 Chaetomium globosum CHGG_03691 I 0.000
CLUG_04669 Candida lusitaniae CLUG_04669 N 0.000
CLUG_04669 Clavispora lusitaniae CLUG_04669 N 0.000
EURHEDRAFT_415786 Aspergillus ruber EURHEDRAFT_415786 I 0.000
e_gw1.00118.151.1 Aspergillus carbonarius e_gw1.00118.151.1 I 0.000
Pc20g15350 Penicillium chrysogenum Pc20g15350 I 0.000
PCH_Pc20g15350 Penicillium rubens PCH_Pc20g15350 I 0.000
PDE_03268 Penicillium oxalicum PDE_03268 I 0.000
PFICI_08643 Pestalotiopsis fici PFICI_08643 N 0.000