Scas_Contig664.4 (Saccharomyces castellii)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Scas_Contig664.4 T259272_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.896 0.896
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.896 0.896
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.875 0.875
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.875 0.875
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig664.4 MADS box 10 57

Links

Other MADS box family TFs
Other Saccharomyces castellii TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001283001 Angiostrongylus cantonensis ACAC_0001283001 N 0.000
ACAC_0001410501 Angiostrongylus cantonensis ACAC_0001410501 N 0.000
ACOC_0000469401 Angiostrongylus costaricensis ACOC_0000469401 N 0.000
ACOC_0000510301 Angiostrongylus costaricensis ACOC_0000510301 N 0.000
ANCCAN_02247 Ancylostoma caninum ANCCAN_02247 N 0.000
ANCCAN_23216 Ancylostoma caninum ANCCAN_23216 N 0.000
ANCCAN_24109 Ancylostoma caninum ANCCAN_24109 N 0.000
ANCCEY_00668 Ancylostoma ceylanicum ANCCEY_00668 N 0.000
ANCCEY_03736 Ancylostoma ceylanicum ANCCEY_03736 N 0.000
ANCDUO_17699 Ancylostoma duodenale ANCDUO_17699 N 0.000
Bm11274 Brugia malayi Bm11274 N 0.000
Bm2582 Brugia malayi Bm2582 N 0.000
BTMF_0001630801 Brugia timori BTMF_0001630801 N 0.000
DICVIV_00659 Dictyocaulus viviparus DICVIV_00659 N 0.000
DICVIV_09133 Dictyocaulus viviparus DICVIV_09133 N 0.000
EEL_0000830101 Elaeophora elaphi EEL_0000830101 N 0.000
HCOI01806100 Haemonchus contortus HCOI01806100 N 0.000
LOAG_14115 Loa loa LOAG_14115 N 0.000
nAv.1.0.1.g02144 Acanthocheilonema viteae nAv.1.0.1.g02144 N 0.000
nDi.2.2.2.g11481 Dirofilaria immitis nDi.2.2.2.g11481 N 0.000
NECAME_08826 Necator americanus NECAME_08826 N 0.000
NECAME_13951 Necator americanus NECAME_13951 N 0.000
nLs.2.1.2.g07235 Litomosoides sigmodontis nLs.2.1.2.g07235 N 0.000
nOo.2.0.1.g08536 Onchocerca ochengi nOo.2.0.1.g08536 N 0.000
OESDEN_12713 Oesophagostomum dentatum OESDEN_12713 N 0.000
OFLC_0001102001 Onchocerca flexuosa OFLC_0001102001 N 0.000
TCLT_0000096701 Thelazia callipaeda TCLT_0000096701 N 0.000
TELCIR_06949 Teladorsagia circumcincta TELCIR_06949 N 0.000
WBGene00244893 Onchocerca volvulus WBGene00244893 N 0.000