srf.L (Xenopus laevis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 XB-GENE-864819 T259293_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		1.000 1.000
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		1.000 1.000
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		1.000 1.000
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		1.000 1.000
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		1.000 1.000
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		1.000 1.000
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		1.000 1.000
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		1.000 1.000
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		1.000 1.000
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		1.000 1.000
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		1.000 1.000
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		1.000 1.000
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		1.000 1.000
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		1.000 1.000
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		1.000 1.000
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		1.000 1.000
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		1.000 1.000
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		1.000 1.000
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		1.000 1.000
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		1.000 1.000
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		1.000 1.000
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		1.000 1.000
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.958 0.958
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.958 0.958
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.896 0.896
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.896 0.896
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.812 0.812
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.812 0.812
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.812 0.812
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.812 0.812
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.812 0.812
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI69536 MADS box 105 152
AAI69538 MADS box 105 152
CAA39832 MADS box 105 152

Links

Other MADS box family TFs
Other Xenopus laevis TFs

520 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01519 Capronia coronata A1O1_01519 I
A1O3_08554 Capronia epimyces A1O3_08554 I
A1O5_13153 Cladophialophora psammophila A1O5_13153 I
A1O7_01658 Cladophialophora yegresii A1O7_01658 I
A1O9_12524 Exophiala aquamarina A1O9_12524 I
ACRE_090020 Acremonium chrysogenum ACRE_090020 I
ARB_00919 Arthroderma benhamiae ARB_00919 I
AUEXF2481DRAFT_44602 Aureobasidium subglaciale AUEXF2481DRAFT_44602 I
BAUCODRAFT_80627 Baudoinia compniacensis BAUCODRAFT_80627 I
BBA_09942 Beauveria bassiana BBA_09942 I
Bcin01g02800 Botrytis cinerea Bcin01g02800 I
BDDG_04107 Blastomyces dermatitidis BDDG_04107 I
BGHDH14_bgh03612 Blumeria graminis BGHDH14_bgh03612 I
ACLA_005610 Aspergillus clavatus CADACLAG00000583 I
CADAFLAG00007012 Aspergillus flavus CADAFLAG00007012 I
AFUA_7G03910 Aspergillus fumigatus CADAFUAG00009349 I
CADANGAG00010568 Aspergillus niger CADANGAG00010568 I
ANIA_04263 Aspergillus nidulans CADANIAG00004391 I
CADAORAG00008823 Aspergillus oryzae CADAORAG00008823 I
ATEG_04274 Aspergillus terreus CADATEAG00008436 I
NFIA_024870 Neosartorya fischeri CADNFIAG00002485 I
CCM_06663 Cordyceps militaris CCM_06663 I
CFIO01_01402 Colletotrichum fioriniae CFIO01_01402 I
CHGG_02842 Chaetomium globosum CHGG_02842 I
CIMG_07510 Coccidioides immitis CIMG_07510 I
CMQ_1010 Grosmannia clavigera CMQ_1010 I
Cob_08009 Colletotrichum orbiculare Cob_08009 I
COCC4DRAFT_85335 Bipolaris maydis COCC4DRAFT_85335 I
COCCADRAFT_97631 Bipolaris zeicola COCCADRAFT_97631 I
COCMIDRAFT_30615 Bipolaris oryzae COCMIDRAFT_30615 I
COCSADRAFT_38658 Bipolaris sorokiniana COCSADRAFT_38658 I
COCVIDRAFT_27458 Bipolaris victoriae COCVIDRAFT_27458 I
CPC735_044120 Coccidioides posadasii CPC735_044120 I
CPUR_01785 Claviceps purpurea CPUR_01785 I
CSUB01_06944 Colletotrichum sublineola CSUB01_06944 I
DOTSEDRAFT_75143 Dothistroma septosporum DOTSEDRAFT_75143 I
EPUS_01319 Endocarpon pusillum EPUS_01319 I
estExt_fgenesh1_pg.C_30329 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_30329 I
estExt_fgenesh1_pg.C_360037 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_360037 I
estExt_fgenesh1_pg.C_50558 Cryphonectria parasitica estExt_fgenesh1_pg.C_50558 I
estExt_fgenesh1_pg.C_sca_1_chr1_3_00031 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00031 I
EURHEDRAFT_414492 Aspergillus ruber EURHEDRAFT_414492 I
F503_00013 Ophiostoma piceae uamh F503_00013 I
fgenesh1_pm.00626_#_25 Aspergillus carbonarius fgenesh1_pm.00626_#_25 I
fgenesh2_pg.C_scaffold_2000699 Neurospora discreta fgenesh2_pg.C_scaffold_2000699 I
FGRRES_01350 Fusarium graminearum FGRRES_01350 I
FOXG_00031 Fusarium oxysporum FOXG_00031 I
FPSE_11518 Fusarium pseudograminearum FPSE_11518 I
FVEG_01485 Fusarium verticillioides FVEG_01485 I
G647_01743 Cladophialophora carrionii G647_01743 I
GGTG_01441 Gaeumannomyces graminis GGTG_01441 I
GLRG_04406 Colletotrichum graminicola GLRG_04406 I
GMDG_07029 Pseudogymnoascus destructans GMDG_07029 I
GSTUM_00011525001 Tuber melanosporum GSTUM_00011525001 I
gw1.7.1227.1 Mycosphaerella graminicola gw1.7.1227.1 I
H101_07675 Trichophyton interdigitale H101_07675 I
H102_06347 Trichophyton rubrum H102_06347 I
H105_06386 Trichophyton soudanense H105_06386 I
HMPREF1120_00115 Exophiala dermatitidis HMPREF1120_00115 I
HMPREF1541_06499 Cyphellophora europaea HMPREF1541_06499 I
HMPREF1624_08033 Sporothrix schenckii HMPREF1624_08033 I
LEMA_P102650.1 Leptosphaeria maculans LEMA_P102650.1 I
M437DRAFT_54595 Aureobasidium melanogenum M437DRAFT_54595 I
M438DRAFT_83140 Aureobasidium pullulans M438DRAFT_83140 I
MAC_04590 Metarhizium acridum MAC_04590 I
MAJ_04597 Metarhizium majus MAJ_04597 I
MANI_013461 Metarhizium anisopliae MANI_013461 I
MAPG_06661 Magnaporthe poae MAPG_06661 I
MBM_02573 Marssonina brunnea MBM_02573 I
MBR_05991 Metarhizium brunneum MBR_05991 I
MCYG_07336 Microsporum canis MCYG_07336 I
MCYG_07336 Arthroderma otae MCYG_07336 I
MGG_00504 Magnaporthe oryzae MGG_00504 I
MGU_06486 Metarhizium guizhouense MGU_06486 I
MGYG_04835 Microsporum gypseum MGYG_04835 I
MYCFIDRAFT_166678 Pseudocercospora fijiensis MYCFIDRAFT_166678 I
Mycgr3G31188 Zymoseptoria tritici Mycgr3G31188 I
MYCTH_2296820 Myceliophthora thermophila MYCTH_2296820 I
NCU02666 Neurospora crassa NCU02666 D
NechaG98635 Fusarium solani NechaG98635 I
NEUTE1DRAFT_126399 Neurospora tetrasperma NEUTE1DRAFT_126399 I
OIDMADRAFT_176995 Oidiodendron maius OIDMADRAFT_176995 I
PABG_02723 Paracoccidioides brasiliensis PABG_02723 I
Pc21g04980 Penicillium chrysogenum Pc21g04980 I
PCH_Pc21g04980 Penicillium rubens PCH_Pc21g04980 I
PDE_00895 Penicillium oxalicum PDE_00895 I
PDIP_82890 Penicillium digitatum PDIP_82890 I
PEX1_051370 Penicillium expansum PEX1_051370 I
PFICI_01803 Pestalotiopsis fici PFICI_01803 I
PITC_037560 Penicillium italicum PITC_037560 I
PMAA_069280 Talaromyces marneffei PMAA_069280 I
PMAA_069280 Penicillium marneffei PMAA_069280 I
PODANS_1_16860 Podospora anserina PODANS_1_16860 I
PTRG_02956 Pyrenophora triticirepentis PTRG_02956 I
PTT_17126 Pyrenophora teres PTT_17126 I
PV04_00278 Capronia semiimmersa PV04_00278 I
PV05_01973 Exophiala xenobiotica PV05_01973 I
PV06_06178 Exophiala oligosperma PV06_06178 I
PV07_09402 Cladophialophora immunda PV07_09402 I
PV08_04806 Exophiala spinifera PV08_04806 I
PV09_06853 Verruconis gallopava PV09_06853 I
PV10_02247 Exophiala mesophila PV10_02247 I
PV11_09912 Exophiala sideris PV11_09912 I
PVAR5_4676 Byssochlamys spectabilis PVAR5_4676 I
S40285_06170 Stachybotrys chlorohalonata S40285_06170 I
S40288_04078 Stachybotrys chartarum S40288_04078 I
SAPIO_CDS3465 Scedosporium apiospermum SAPIO_CDS3465 I
SBOR_1357 Sclerotinia borealis SBOR_1357 I
SEPMUDRAFT_127867 Sphaerulina musiva SEPMUDRAFT_127867 I
SETTUDRAFT_35656 Setosphaeria turcica SETTUDRAFT_35656 I
SMAC_04325 Sordaria macrospora SMAC_04325 I
SNOG_03932 Stagonospora nodorum SNOG_03932 I
SPBR_03430 Sporothrix brasiliensis SPBR_03430 I
TEQG_00397 Trichophyton equinum TEQG_00397 I
TESG_04398 Trichophyton tonsurans TESG_04398 I
THITE_2112250 Thielavia terrestris THITE_2112250 I
TRIATDRAFT_234627 Trichoderma atroviride TRIATDRAFT_234627 I
TRIREDRAFT_75672 Trichoderma reesei TRIREDRAFT_75672 I
TRIVIDRAFT_216960 Trichoderma virens TRIVIDRAFT_216960 I
TRV_00768 Trichophyton verrucosum TRV_00768 I
U727_00430149431 Penicillium solitum U727_00430149431 I
UREG_07775 Uncinocarpus reesii UREG_07775 I
UV8b_2975 Ustilaginoidea virens UV8b_2975 I
V499_09111 Pseudogymnoascus pannorum V499_09111 I
VDAG_08721 Verticillium dahliae VDAG_08721 I
VDBG_04504 Verticillium albo atrum VDBG_04504 I
VDBG_04504 Verticillium alfalfae VDBG_04504 I
VHEMI08987 Torrubiella hemipterigena VHEMI08987 I
W97_04210 Coniosporium apollinis W97_04210 I
X797_005747 Metarhizium robertsii X797_005747 I
Z517_02242 Fonsecaea pedrosoi Z517_02242 I
Z518_10500 Rhinocladiella mackenziei Z518_10500 I
Z519_04370 Cladophialophora bantiana Z519_04370 I