OESDEN_12192 (Oesophagostomum dentatum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 OESDEN_12192 T259620_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.958 0.958
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.958 0.958
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.958 0.958
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.917 0.917
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.917 0.917
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.917 0.917
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.917 0.917
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.917 0.917
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.917 0.917
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.917 0.917
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.917 0.917
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.917 0.917
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.917 0.917
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.917 0.917
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.917 0.917
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.917 0.917
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.917 0.917
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.917 0.917
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.917 0.917
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.917 0.917
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.917 0.917
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.917 0.917
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.917 0.917
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.917 0.917
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.917 0.917
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.812 0.812
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.750 0.750
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.750 0.750
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.750 0.750
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.750 0.750
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.750 0.750
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OESDEN_12192 MADS box 53 100

Links

Other MADS box family TFs
Other Oesophagostomum dentatum TFs

477 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.000
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.000
Ca_08043 Cicer arietinum Ca_08043 I 0.000
Cla006547 Citrullus lanatus Cla006547 I 0.000
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.000
Genemark1.2391_g Coccomyxa subellipsoidea C169 Genemark1.2391_g N 0.000
GLYMA09G03390 Glycine max GLYMA09G03390 I 0.000
GLYMA15G14320 Glycine max GLYMA15G14320 I 0.000
GRMZM2G095239 Zea mays GRMZM2G095239 N 0.000
GRMZM2G163291 Zea mays GRMZM2G163291 N 0.000
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I 0.000
LPERR03G22590 Leersia perrieri LPERR03G22590 N 0.000
mg015409m Mimulus guttatus mg015409m N 0.000
mgf000125m Mimulus guttatus mgf000125m I 0.000
mgf004823m Mimulus guttatus mgf004823m I 0.000
mgf010975m Mimulus guttatus mgf010975m I 0.000
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.000
MLOC_34636 Hordeum vulgare MLOC_34636 N 0.000
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.000
MTR_2g031870 Medicago truncatula MTR_2g031870 I 0.000
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.000
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.000
Pavir.Eb00490 Panicum virgatum Pavir.Eb00490 N 0.000
Pavir.Ia01166 Panicum virgatum Pavir.Ia01166 N 0.000
Pavir.Ib04118 Panicum virgatum Pavir.Ib04118 N 0.000
Pavir.J13527 Panicum virgatum Pavir.J13527 N 0.000
Pavir.J17249 Panicum virgatum Pavir.J17249 N 0.000
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.000
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.000
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.000
Sb01g013670 Sorghum bicolor Sb01g013670 N 0.000
Sb03g005080 Sorghum bicolor Sb03g005080 N 0.000
Si002375m.g Setaria italica Si002375m.g N 0.000
Si036471m.g Setaria italica Si036471m.g N 0.000
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.000
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.000
Traes_5AL_1FB74A6E1 Triticum aestivum Traes_5AL_1FB74A6E1 N 0.000
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.000
Traes_5BL_692FEF87A Triticum aestivum Traes_5BL_692FEF87A N 0.000
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.000
Traes_5DL_1C6A8C773 Triticum aestivum Traes_5DL_1C6A8C773 N 0.000
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.000
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.000
TRIUR3_26840 Triticum urartu TRIUR3_26840 N 0.000
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.000
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.000