TELCIR_03792 (Teladorsagia circumcincta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 TELCIR_03792 T259664_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
unc-120
M00684_2.00 		Caenorhabditis elegans
CHWAWWDGG
CCHWWTWDG		 PBM
Narasimhan et al.(2015)
pTH10822 		0.893 0.893
bs
M03915_2.00 		Drosophila melanogaster
NCCWTATAWGGN
NCCWTATAWGGN		 SELEX
Nitta et al.(2015)
bs_1 		0.893 0.893
bs
M03916_2.00 		Drosophila melanogaster
NCCWTAHAWGGH
DCCWTDTAWGGN		 SELEX
Nitta et al.(2015)
bs_2 		0.893 0.893
srfA
M02283_2.00 		Dictyostelium discoideum
MYDWWWNNRD
HYNNWWWHRK		 PBM
Weirauch et al.(2014)
pTH5539 		0.857 0.857
Srf
M00178_2.00 		Mus musculus
NNDDWWHHNN
NNDDWWHHNN		 PBM
Badis et al.(2009)
Srf_3509 		0.857 0.857
SRF
M03341_2.00 		Homo sapiens
DCCWTATATGGT
ACCATATAWGGH		 SELEX
Jolma et al.(2013)
SRF_1 		0.857 0.857
SRF
M03342_2.00 		Homo sapiens
TKHCCWTATATGGKMA
TKMCCATATAWGGDMA		 SELEX
Jolma et al.(2013)
SRF_2 		0.857 0.857
SRF
M05553_2.00 		Homo sapiens
CCNTANAWGG
CCWTNTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_HT-SELEX 		0.857 0.857
SRF
M07981_2.00 		Homo sapiens
NNNWDNCCAWAWAWGGNVD
HBNCCWTWTWTGGNHWNNN		 ChIP-seq
Gerstein et al.(2012)
GM12878_SRF_HudsonAlpha 		0.857 0.857
SRF
M07982_2.00 		Homo sapiens
CCAWATAAGGNMAD
HTKNCCTTATWTGG		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_SRF_HudsonAlpha 		0.857 0.857
SRF
M07983_2.00 		Homo sapiens
NNWNNCCAWAWAWGGNVD
HBNCCWTWTWTGGNNWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_SRF_HudsonAlpha 		0.857 0.857
SRF
M07984_2.00 		Homo sapiens
GNCCAWATADGGHMANN
NNTKDCCHTATWTGGNC		 ChIP-seq
Gerstein et al.(2012)
K562_SRF_HudsonAlpha 		0.857 0.857
SRF
M09249_2.00 		Homo sapiens
HNWBVCCAWAWAWGGNRR
YYNCCWTWTWTGGBVWND		 Misc
Kulakovskiy et al.(2013)
SRF_HUMAN.H11MO.0.A 		0.857 0.857
Srf
M09254_2.00 		Mus musculus
NWDVCCAWAWAWGGVMR
YKBCCWTWTWTGGBHWN		 Misc
Kulakovskiy et al.(2013)
SRF_MOUSE.H11MO.0.A 		0.857 0.857
Srf
M09598_2.00 		Mus musculus
CCWWATWWGGNH
DNCCWWATWWGG		 Misc
Heinz et al.(2010)
PUER-Srf_Sullivan_et_al. 		0.857 0.857
SRF
M10947_2.00 		Homo sapiens
MNBWCCWTATAWGGGCAT
ATGCCCWTATAWGGWVNK		 Transfac
Matys et al.(2006)
V$SRF_01 		0.857 0.857
SRF
M10948_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_02 		0.857 0.857
SRF
M10949_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_03 		0.857 0.857
SRF
M10950_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_09 		0.857 0.857
SRF
M10951_2.00 		Homo sapiens
DCCWTATAWGGVSHB
VDSBCCWTATAWGGH		 Transfac
Matys et al.(2006)
V$SRF_C 		0.857 0.857
SRF
M10952_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q3 		0.857 0.857
SRF
M10953_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q4 		0.857 0.857
SRF
M10954_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_01 		0.857 0.857
SRF
M10955_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRF_Q5_02 		0.857 0.857
SRF
M10956_2.00 		Homo sapiens
BNCCAWATAWGGVN
NBCCWTATWTGGNV		 Transfac
Matys et al.(2006)
V$SRF_Q6 		0.857 0.857
SRF
M05554_2.00 		Homo sapiens
CCNTAYAWGG
CCWTRTANGG		 SELEX
Yin et al.(2017)
SRF_eDBD_Methyl-HT-SELEX 		0.857 0.857
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.714 0.714
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.714 0.714
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.714 0.714
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.714 0.714
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.714 0.714
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TELCIR_03792 MADS box 105 132

Links

Other MADS box family TFs
Other Teladorsagia circumcincta TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA026216 Oryza indica BGIOSGA026216 I
BRADI1G20210 Brachypodium distachyon BRADI1G20210 I
BRADI1G61477 Brachypodium distachyon BRADI1G61477 I
F775_06570 Aegilops tauschii F775_06570 I
GRMZM2G026417 Zea mays GRMZM2G026417 I
GRMZM2G030458 Zea mays GRMZM2G030458 I
GRMZM2G075122 Zea mays GRMZM2G075122 I
GRMZM2G082318 Zea mays GRMZM2G082318 I
LPERR07G20450 Leersia perrieri LPERR07G20450 I
MLOC_10638 Hordeum vulgare MLOC_10638 I
OB07G29080 Oryza brachyantha OB07G29080 I
OBART07G23470 Oryza barthii OBART07G23470 I
OGLUM07G23550 Oryza glumaepatula OGLUM07G23550 I
OMERI03G17110 Oryza meridionalis OMERI03G17110 I
OMERI07G19920 Oryza meridionalis OMERI07G19920 I
ONIVA04G28640 Oryza nivara ONIVA04G28640 I
ONIVA07G23260 Oryza nivara ONIVA07G23260 I
OPUNC03G17850 Oryza punctata OPUNC03G17850 I
OPUNC07G22140 Oryza punctata OPUNC07G22140 I
ORGLA03G0177400 Oryza glaberrima ORGLA03G0177400 I
ORGLA07G0264000 Oryza glaberrima ORGLA07G0264000 I
ORUFI03G19470 Oryza rufipogon ORUFI03G19470 I
ORUFI07G24680 Oryza rufipogon ORUFI07G24680 I
OS03G0370250 Oryza sativa OS03G0370250 D
OS07G0636100 Oryza sativa OS07G0636100 I
Pavir.Ba00022 Panicum virgatum Pavir.Ba00022 I
Pavir.Bb03462 Panicum virgatum Pavir.Bb03462 I
Pavir.Ib01769 Panicum virgatum Pavir.Ib01769 I
Pavir.J23796 Panicum virgatum Pavir.J23796 I
Sb02g040550 Sorghum bicolor Sb02g040550 I
Si030239m.g Setaria italica Si030239m.g I
Traes_2AS_8C5E619C6 Triticum aestivum Traes_2AS_8C5E619C6 I
Traes_2BS_EEE045515 Triticum aestivum Traes_2BS_EEE045515 I
Traes_2DS_6BAF1825F Triticum aestivum Traes_2DS_6BAF1825F I
Traes_4AS_928691B39 Triticum aestivum Traes_4AS_928691B39 I
Traes_4BS_96AE357C6 Triticum aestivum Traes_4BS_96AE357C6 I
Traes_4DL_21C202E37 Triticum aestivum Traes_4DL_21C202E37 I
TRIUR3_32773 Triticum urartu TRIUR3_32773 I