CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

mecp2 *(Takifugu rubripes)* MBD
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF01429 (MBD)	IPR001739	ENSTRUG00000006419	T260466_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Mecp2 M00806_2.00	Mus musculus	NNNNNHAHNN	NNDTDNNNNN	PBM Weirauch et al.(2013) pTH3054	0.887	0.887
MECP2 M09257_2.00	Homo sapiens	SCCGGRR	YYCCGGS	Misc Kulakovskiy et al.(2013) MECP2_HUMAN.H11MO.0.C	0.887	0.887
Mecp2 M09259_2.00	Mus musculus	SCCGGRR	YYCCGGS	Misc Kulakovskiy et al.(2013) MECP2_MOUSE.H11MO.0.C	0.887	0.887
MECP2 M11032_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MECP2_01	0.887	0.887
MECP2 M11033_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MECP2_02	0.887	0.887
MECP2 M11034_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MECP2_Q4_01	0.887	0.887
MECP2 M11035_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MECP2_Q4	0.887	0.887
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSTRUP00000015715	MBD	106	176	GPLYDDPSLPEGWTRKLKQRKSGRSAGKFDVYLINSEGKAFRSKVELIAYFQKVGDTTTDPNDFDFTVTGR
ENSTRUP00000015716	MBD	26	96	GPLYDDPSLPEGWTRKLKQRKSGRSAGKFDVYLINSEGKAFRSKVELIAYFQKVGDTTTDPNDFDFTVTGR
ENSTRUP00000015717	MBD	19	89	GPLYDDPSLPEGWTRKLKQRKSGRSAGKFDVYLINSEGKAFRSKVELIAYFQKVGDTTTDPNDFDFTVTGR

Links
Other MBD family TFs
Other *Takifugu rubripes* TFs