Bo1g003420 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo1g003420 T267055_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAX3
M02700_2.00 		Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS		 SELEX
Mathelier et al.(2014)
MA0576.1 		0.805 0.882
RAX3
M11043_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB84_01 		0.805 0.882
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g003420.1 Myb 14 62
Bo1g003420.1 Myb 68 113

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

441 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA034611 Oryza indica BGIOSGA034611 I
BGIOSGA036755 Oryza indica BGIOSGA036755 I
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I
BRADI4G44342 Brachypodium distachyon BRADI4G44342 N
F775_23346 Aegilops tauschii F775_23346 N
gene19219-v1.0-hybrid Fragaria vesca gene19219-v1.0-hybrid I
GLYMA04G41701 Glycine max GLYMA04G41701 I
GLYMA06G13090 Glycine max GLYMA06G13090 I
GLYMA08G02580 Glycine max GLYMA08G02580 I
GRMZM2G005207 Zea mays GRMZM2G005207 I
GRMZM2G029292 Zea mays GRMZM2G029292 I
GRMZM2G139815 Zea mays GRMZM2G139815 I
GSMUA_Achr6G05710_001 Musa acuminata GSMUA_Achr6G05710_001 I
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I
LPERR07G11260 Leersia perrieri LPERR07G11260 I
LPERR12G01100 Leersia perrieri LPERR12G01100 I
MLOC_68369 Hordeum vulgare MLOC_68369 N
MLOC_78461 Hordeum vulgare MLOC_78461 I
OB01G44170 Oryza brachyantha OB01G44170 I
OB11G27340 Oryza brachyantha OB11G27340 I
OB12G11040 Oryza brachyantha OB12G11040 I
OBART11G01120 Oryza barthii OBART11G01120 I
OBART12G00860 Oryza barthii OBART12G00860 I
OGLUM11G00880 Oryza glumaepatula OGLUM11G00880 I
OMERI11G01540 Oryza meridionalis OMERI11G01540 I
OMERI11G01580 Oryza meridionalis OMERI11G01580 I
ONIVA11G01190 Oryza nivara ONIVA11G01190 I
OPUNC11G00990 Oryza punctata OPUNC11G00990 N
OPUNC12G01000 Oryza punctata OPUNC12G01000 N
ORGLA11G0202100 Oryza glaberrima ORGLA11G0202100 I
ORGLA12G0007700 Oryza glaberrima ORGLA12G0007700 I
Pavir.Ba02750 Panicum virgatum Pavir.Ba02750 I
Pavir.Bb01218 Panicum virgatum Pavir.Bb01218 I
Pavir.Ca00085 Panicum virgatum Pavir.Ca00085 N
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I
Pavir.J05812 Panicum virgatum Pavir.J05812 I
Pavir.J12092 Panicum virgatum Pavir.J12092 I
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I
Pm018401 Prunus mume Pm018401 I
PRUPE_ppa007708mg Prunus persica PRUPE_ppa007708mg I
Sb02g011050 Sorghum bicolor Sb02g011050 I
Sb08g002520 Sorghum bicolor Sb08g002520 I
Si003782m.g Setaria italica Si003782m.g N
Si010813m.g Setaria italica Si010813m.g N
Si028202m.g Setaria italica Si028202m.g I
Si036565m.g Setaria italica Si036565m.g I
Traes_5BL_175E7FC38 Triticum aestivum Traes_5BL_175E7FC38 N
Traes_5DL_09F1F8F79 Triticum aestivum Traes_5DL_09F1F8F79 N
TRIUR3_24639 Triticum urartu TRIUR3_24639 N
VIT_02s0025g01280 Vitis vinifera VIT_02s0025g01280 I
VIT_16s0050g02510 Vitis vinifera VIT_16s0050g02510 I