Bra001323 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra001323 T267696_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.757 0.785
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.748 0.796
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.675 0.688
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.675 0.677
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.675 0.677
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.670 0.634
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.670 0.634
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.670 0.634
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.670 0.656
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra001323.1-P Myb 10 56
Bra001323.1-P Myb 62 107

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0001276001 Angiostrongylus cantonensis ACAC_0001276001 N
ANCCAN_05973 Ancylostoma caninum ANCCAN_05973 N
ANCDUO_01950 Ancylostoma duodenale ANCDUO_01950 N
ANCDUO_20840 Ancylostoma duodenale ANCDUO_20840 N
DICVIV_09699 Dictyocaulus viviparus DICVIV_09699 N
NECAME_16953 Necator americanus NECAME_16953 N
Ppa-dpy-20 Pristionchus pacificus PPA07613 N
scaffold1344-EXSNAP2012.1 Pristionchus exspectatus scaffold1344-EXSNAP2012.1 N
scaffold1366-EXSNAP2012.1 Pristionchus exspectatus scaffold1366-EXSNAP2012.1 N
SVUK_0000289501 Strongylus vulgaris SVUK_0000289501 N
TELCIR_08985 Teladorsagia circumcincta TELCIR_08985 N