Bra030496 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra030496 T268049_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.863 0.935
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.863 0.935
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.853 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.810 0.804
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.810 0.804
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.810 0.804
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.810 0.804
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.810 0.804
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.808 0.826
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.808 0.826
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.739 0.761
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.739 0.761
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.739 0.761
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.738 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030496.1-P Myb 27 72

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00576s150 Brassica oleracea Bo00576s150 N 0.000
Bo01073s040 Brassica oleracea Bo01073s040 N 0.000
Bo01093s010 Brassica oleracea Bo01093s010 N 0.000
Bo01167s020 Brassica oleracea Bo01167s020 N 0.000
Bo01294s010 Brassica oleracea Bo01294s010 N 0.000
Bo04405s010 Brassica oleracea Bo04405s010 N 0.000
Bo08089s010 Brassica oleracea Bo08089s010 N 0.000
Bo09855s010 Brassica oleracea Bo09855s010 N 0.000
Bo1g017840 Brassica oleracea Bo1g017840 N 0.000
Bo1g028470 Brassica oleracea Bo1g028470 N 0.000
Bo1g053550 Brassica oleracea Bo1g053550 N 0.000
Bo1g101740 Brassica oleracea Bo1g101740 N 0.000
Bo2g050430 Brassica oleracea Bo2g050430 N 0.000
Bo2g100490 Brassica oleracea Bo2g100490 N 0.000
Bo2g134150 Brassica oleracea Bo2g134150 N 0.000
Bo3g061460 Brassica oleracea Bo3g061460 N 0.000
Bo3g078620 Brassica oleracea Bo3g078620 N 0.000
Bo3g091380 Brassica oleracea Bo3g091380 N 0.000
Bo3g107290 Brassica oleracea Bo3g107290 N 0.000
Bo3g113790 Brassica oleracea Bo3g113790 N 0.000
Bo3g169160 Brassica oleracea Bo3g169160 N 0.000
Bo4g009340 Brassica oleracea Bo4g009340 N 0.000
Bo4g052050 Brassica oleracea Bo4g052050 N 0.000
Bo4g096780 Brassica oleracea Bo4g096780 N 0.000
Bo4g154600 Brassica oleracea Bo4g154600 N 0.000
Bo4g161430 Brassica oleracea Bo4g161430 N 0.000
Bo4g173170 Brassica oleracea Bo4g173170 N 0.000
Bo5g034250 Brassica oleracea Bo5g034250 N 0.000
Bo5g041280 Brassica oleracea Bo5g041280 N 0.000
Bo5g075210 Brassica oleracea Bo5g075210 N 0.000
Bo5g111170 Brassica oleracea Bo5g111170 N 0.000
Bo5g117160 Brassica oleracea Bo5g117160 N 0.000
Bo6g017000 Brassica oleracea Bo6g017000 N 0.000
Bo6g087610 Brassica oleracea Bo6g087610 N 0.000
Bo7g016140 Brassica oleracea Bo7g016140 N 0.000
Bo7g043390 Brassica oleracea Bo7g043390 N 0.000
Bo7g065570 Brassica oleracea Bo7g065570 N 0.000
Bo7g067460 Brassica oleracea Bo7g067460 N 0.000
Bo7g101500 Brassica oleracea Bo7g101500 N 0.000
Bo8g007060 Brassica oleracea Bo8g007060 N 0.000
Bo8g066500 Brassica oleracea Bo8g066500 N 0.000
Bo9g140760 Brassica oleracea Bo9g140760 N 0.000
Bo9g163500 Brassica oleracea Bo9g163500 N 0.000
Bo9g181220 Brassica oleracea Bo9g181220 N 0.000
Bostr.0597s0093 Boechera stricta Bostr.0597s0093 N 0.000
Bostr.12302s0059 Boechera stricta Bostr.12302s0059 N 0.000
Bostr.13404s0068 Boechera stricta Bostr.13404s0068 N 0.000
Bostr.19424s0811 Boechera stricta Bostr.19424s0811 N 0.000