estExt_fgenesh1_pg.C_190109 (Bigelowiella natans)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 estExt_fgenesh1_pg.C_190109 T270191_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.743 0.783
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.743 0.783
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.743 0.783
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.743 0.761
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.743 0.761
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.743 0.761
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.733 0.739
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.733 0.739
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.733 0.739
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.694 0.739
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.671 0.717
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.671 0.717
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.671 0.717
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
JGI_V11_87346 Myb 31 76

Links

Other Myb/SANT family TFs
Other Bigelowiella natans TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA020470 Oryza indica BGIOSGA020470 N
BRADI2G14550 Brachypodium distachyon BRADI2G14550 N
BRADI2G14567 Brachypodium distachyon BRADI2G14567 N
F775_05183 Aegilops tauschii F775_05183 N
GRMZM5G830932 Zea mays GRMZM5G830932 N
LPERR05G23430 Leersia perrieri LPERR05G23430 N
MLOC_12452 Hordeum vulgare MLOC_12452 N
OB05G35290 Oryza brachyantha OB05G35290 N
OBART05G27740 Oryza barthii OBART05G27740 N
OGLUM05G29230 Oryza glumaepatula OGLUM05G29230 N
OLONG_010405 Oryza longistaminata OLONG_010405 N
OMERI05G23660 Oryza meridionalis OMERI05G23660 N
ONIVA05G29730 Oryza nivara ONIVA05G29730 N
OPUNC05G25360 Oryza punctata OPUNC05G25360 N
ORGLA05G0241100 Oryza glaberrima ORGLA05G0241100 N
ORUFI05G29710 Oryza rufipogon ORUFI05G29710 N
OS05G0589200 Oryza sativa OS05G0589200 N
Pavir.J02804 Panicum virgatum Pavir.J02804 N
Sb09g030350 Sorghum bicolor Sb09g030350 N
Sb09g030380 Sorghum bicolor Sb09g030380 N
Si021619m.g Setaria italica Si021619m.g N
Traes_1AL_2F1278623 Triticum aestivum Traes_1AL_2F1278623 N
Traes_1BL_3E662FC82 Triticum aestivum Traes_1BL_3E662FC82 N
Traes_1DL_F23E9DAA9 Triticum aestivum Traes_1DL_F23E9DAA9 N
TRIUR3_15558 Triticum urartu TRIUR3_15558 N