CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

RVE2 *(Arabidopsis lyrata)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	fgenesh2_kg.7__3122__AT5G37260.1	T270841_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.862	0.870
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.814	0.891
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.814	0.891
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.814	0.891
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.800	0.848
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.800	0.848
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.792	0.891
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.779	0.783
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.779	0.783
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.779	0.783
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.779	0.783
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.779	0.783
CCA1 M00875_2.00	Arabidopsis thaliana	NDNRWATCN	NGATWYNHN	PBM Franco-Zorrilla et al.(2014) CCA1	0.752	0.804
CCA1 M11039_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CCA1_Q5	0.752	0.804
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.700	0.652
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.700	0.652
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.700	0.652
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.693	0.652
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.693	0.652
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.693	0.652
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.693	0.652
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.693	0.652
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.693	0.652
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.683	0.630
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.683	0.630
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.683	0.630
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh2_kg.7__3122__AT5G37260.1	Myb	35	80	REKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFF

Links
Other Myb/SANT family TFs
Other *Arabidopsis lyrata* TFs

461 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZNF688	Bos taurus	ENSBTAG00000019357	N
ZNF688	Canis familiaris	ENSCAFG00000029440	N
ZNF688	Callithrix jacchus	ENSCJAG00000002695	N
ENSCSAG00000005872	Chlorocebus sabaeus	ENSCSAG00000005872	N
ENSDORG00000009873	Dipodomys ordii	ENSDORG00000009873	N
ZNF688	Equus caballus	ENSECAG00000006619	N
ZNF688	Echinops telfairi	ENSETEG00000018350	N
ZNF688	Felis catus	ENSFCAG00000029527	N
ZNF688	Homo sapiens	ENSG00000229809	N
ZNF688	Gorilla gorilla	ENSGGOG00000022609	N
ZNF688	Loxodonta africana	ENSLAFG00000013608	N
ZNF688	Myotis lucifugus	ENSMLUG00000016466	N
ZNF688	Macaca mulatta	ENSMMUG00000001122	N
ENSMMUP00000001488	Macaca fascicularis	ENSMMUP00000001488	N
ENSMPUG00000012305	Mustela putorius furo	ENSMPUG00000012305	N
Zfp688	Mus musculus	ENSMUSG00000045251	N
ENSNLEG00000000140	Nomascus leucogenys	ENSNLEG00000000140	N
ENSOARG00000006773	Ovis aries	ENSOARG00000006773	N
ZNF688	Oryctolagus cuniculus	ENSOCUG00000015416	N
ZNF688	Otolemur garnettii	ENSOGAG00000033699	N
ENSP00000223459-D1	Bos grunniens	ENSP00000223459-D1	N
ENSPANG00000021149	Papio anubis	ENSPANG00000021149	N
ZNF688	Pan troglodytes	ENSPTRG00000041892	N
Zfp688	Rattus norvegicus	ENSRNOG00000018379	N
ZNF688	Sorex araneus	ENSSARG00000008749	N
ENSSTOG00000013283	Ictidomys tridecemlineatus	ENSSTOG00000013283	N

RVE2 (Arabidopsis lyrata) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

461 Related TFs

RVE2 **(Arabidopsis lyrata)
Myb/SANT**