CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OGLUM06G04280
(
Oryza glumaepatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OGLUM06G04280
T275752_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.785
0.849
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.785
0.849
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OGLUM06G04280.1
Myb
23
69
KGQWTLEEDRKLVKLVEQFGLRKWSHIAQILPGRVGKQCRERWHNHL
OGLUM06G04280.1
Myb
75
120
KDTWSEEEDIVLIQTHKEVGNKWAEIAKHLPGRTENSIKNHWNATK
Links
Other
Myb/SANT
family TFs
Other
Oryza glumaepatula
TFs
133 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
augustus_masked-nMf.1.1.scaf11440-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf11440-processed-gene-0.0
N
BXY_0600000
Bursaphelenchus xylophilus
BXY_0600000
N
L596_g18998
Steinernema carpocapsae
L596_g18998
N
L889_g16824
Steinernema feltiae
L889_g16824
N
L892_g28062
Steinernema scapterisci
L892_g28062
N
L893_g8502
Steinernema glaseri
L893_g8502
N
MhA1_Contig134.frz3.gene34
Meloidogyne hapla
MhA1_Contig134.frz3.gene34
N
Minc00429
Meloidogyne incognita
Minc00429
N
Minc11430
Meloidogyne incognita
Minc11430
N
PPA24751
Pristionchus pacificus
PPA24751
N
RSKR_0000923100
Rhabditophanes kr3021
RSKR_0000923100
N