ORGLA06G0168900 (Oryza glaberrima)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ORGLA06G0168900 T276765_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.700 0.728
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.700 0.728
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.700 0.728
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.694 0.761
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.694 0.761
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.694 0.761
MYB101
M07051_2.00 		Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN		 Dap-seq
OMalley et al.(2016)
MYB101_col_a 		0.690 0.739
MYB101
M07052_2.00 		Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH		 Dap-seq
OMalley et al.(2016)
MYB101_colamp_a 		0.690 0.739
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.686 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA06G0168900.1 Myb 247 294
ORGLA06G0168900.1 Myb 300 344

Links

Other Myb/SANT family TFs
Other Oryza glaberrima TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015342 Calypte anna Aan_R015342 N
Brh_R011790 Buceros rhinoceros Brh_R011790 N
NFX1 Anolis carolinensis ENSACAG00000002412 N
ENSAPLG00000005524 Anas platyrhynchos ENSAPLG00000005524 N
ENSFALG00000013143 Ficedula albicollis ENSFALG00000013143 N
NFX1 Homo sapiens ENSG00000086102 N
si:dkey-10f23.2 Gasterosteus aculeatus ENSGACG00000004560 N
NFX1 Gorilla gorilla ENSGGOG00000006751 N
ENSLACG00000000769 Latimeria chalumnae ENSLACG00000000769 N
ENSLOCG00000011211 Lepisosteus oculatus ENSLOCG00000011211 N
NFX1 Monodelphis domestica ENSMODG00000003990 N
NFX1 Ornithorhynchus anatinus ENSOANG00000002524 N
ENSPSIG00000008420 Pelodiscus sinensis ENSPSIG00000008420 N
NFX1 Pan troglodytes ENSPTRG00000020858 N
ENSSHAG00000010272 Sarcophilus harrisii ENSSHAG00000010272 N
NFX1 Taeniopygia guttata ENSTGUG00000007055 N
si:dkey-10f23.2 Takifugu rubripes ENSTRUG00000009872 N
Tal_R011854 Tyto alba Tal_R011854 N
XP_002935327 Xenopus tropicalis XP_002935327 N