POPTR_0004s08650 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0004s08650 T278263_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.742 0.763
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.742 0.763
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.740 0.774
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.689 0.677
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.689 0.677
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.689 0.677
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.679 0.731
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.674 0.710
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.674 0.710
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.674 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s08650.1 Myb 13 60
POPTR_0004s08650.1 Myb 66 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

783 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000008136 Ailuropoda melanoleuca ENSAMEG00000008136 N
ZNF317 Bos taurus ENSBTAG00000016077 N
ENSBTAP00000021396-D1 Bos grunniens ENSBTAP00000021396-D1 N
ZNF317 Canis familiaris ENSCAFG00000018071 N
ZNF317 Choloepus hoffmanni ENSCHOG00000004080 N
ZNF317 Callithrix jacchus ENSCJAG00000006214 I
ENSCPOG00000003954 Cavia porcellus ENSCPOG00000003954 I
ENSCSAG00000007764 Chlorocebus sabaeus ENSCSAG00000007764 I
ZNF317 Dasypus novemcinctus ENSDNOG00000044751 I
Zfp317 Dipodomys ordii ENSDORG00000011612 I
ZNF317 Equus caballus ENSECAG00000022001 N
ZNF317 Homo sapiens ENSG00000130803 D
ZNF317 Myotis lucifugus ENSMLUG00000012039 I
ZNF317 Macaca mulatta ENSMMUG00000020841 I
Zfp317 Mus musculus ENSMUSG00000057551 I
ENSNLEG00000011962 Nomascus leucogenys ENSNLEG00000011962 I
ENSOCUG00000007715 Oryctolagus cuniculus ENSOCUG00000007715 I
ZNF317 Otolemur garnettii ENSOGAG00000011129 I
ZNF317 Ochotona princeps ENSOPRG00000014061 I
ENSP00000247956 Macaca fascicularis ENSP00000247956 I
ENSPANG00000007764 Papio anubis ENSPANG00000007764 I
ENSPPYG00000009520 Pongo abelii ENSPPYG00000009520 I
ZNF317 Pan troglodytes ENSPTRG00000042436 I
ENSSTOG00000021569 Ictidomys tridecemlineatus ENSSTOG00000021569 I
ZNF317 Tursiops truncatus ENSTTRG00000002210 N
Myotis_brandtii_ZNF317_10002973 Myotis brandtii Myotis_brandtii_ZNF317_10002973 I