CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0004s18020 *(Populus trichocarpa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	POPTR_0004s18020	T278273_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB4 M02303_2.00	Arabidopsis thaliana	YACCWACY	RGTWGGTR	PBM Weirauch et al.(2014) pTH7075	0.867	0.957
MYB4 M07115_2.00	Arabidopsis thaliana	NYYACCWAMHWHNDD	HHNDWDKTWGGTRRN	Dap-seq OMalley et al.(2016) MYB4_col200_a	0.867	0.957
MYB3 M02288_2.00	Arabidopsis thaliana	NNYACCTACCN	NGGTAGGTRNN	PBM Weirauch et al.(2014) pTH7125	0.821	0.914
MYB111 M00882_2.00	Arabidopsis thaliana	NNNAMCDAMY	RKTHGKTNNN	PBM Franco-Zorrilla et al.(2014) MYB111	0.684	0.763
MYB51 M07010_2.00	Arabidopsis thaliana	NHNHHNHNNNYYYACCWACYW	WRGTWGGTRRRNNNDNDDNDN	Dap-seq OMalley et al.(2016) MYB51_col_a	0.674	0.731
Q2TCH0_PETHY M11072_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PH4_01	0.664	0.710
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0004s18020.1	Myb	14	61	KGAWTKEEDDRLIAYIRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL
POPTR_0004s18020.1	Myb	67	112	RGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI
POPTR_0004s18020.2	Myb	14	61	KGAWTKEEDDRLIAYIRTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL
POPTR_0004s18020.2	Myb	67	112	RGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHI

Links
Other Myb/SANT family TFs
Other *Populus trichocarpa* TFs