CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0017s12140 *(Populus trichocarpa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	POPTR_0017s12140	T278509_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
MYB105 M07031_2.00	Arabidopsis thaliana	TAACGGTWWHDDW	WHHDWWACCGTTA	Dap-seq OMalley et al.(2016) MYB105_col_a	0.765	0.868
MYB105 M07032_2.00	Arabidopsis thaliana	NNDWHDHTAACGGWWWH	DWWWCCGTTADHDWHNN	Dap-seq OMalley et al.(2016) MYB105_colamp_a	0.765	0.868
MYB56 M07130_2.00	Arabidopsis thaliana	DDHNHTAACKGWHWH	DWDWCMGTTADNDHH	Dap-seq OMalley et al.(2016) MYB56_col_a	0.739	0.802
MYB56 M07131_2.00	Arabidopsis thaliana	DNNHTAACGGWHWHD	HDWDWCCGTTADNNH	Dap-seq OMalley et al.(2016) MYB56_colamp_a	0.739	0.802
MYB52 M00871_2.00	Arabidopsis thaliana	NNNAMCNDNN	NNHNGKTNNN	PBM Franco-Zorrilla et al.(2014) MYB52	0.725	0.769
MYB52 M07007_2.00	Arabidopsis thaliana	TAACGGTNHHD	HDDNACCGTTA	Dap-seq OMalley et al.(2016) MYB52_col_a	0.725	0.769
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0017s12140.1	Myb	130	176	RGHWRPAEDSKLKELVALYGPQNWNLIAEKLRGRSGKSCRLRWFNQL
POPTR_0017s12140.1	Myb	182	225	RTAFNEDEEERLMAAHRVYGNKWALIARFFPGRTDNAVKNHWHI

Links
Other Myb/SANT family TFs
Other *Populus trichocarpa* TFs