CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

cassava35529.valid.m1 *(Manihot esculenta)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	cassava35529.valid.m1	T284219_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.857	0.913
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.857	0.913
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.857	0.913
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.838	0.870
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.829	0.913
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.819	0.891
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.819	0.891
CCA1 M00875_2.00	Arabidopsis thaliana	NDNRWATCN	NGATWYNHN	PBM Franco-Zorrilla et al.(2014) CCA1	0.783	0.826
CCA1 M11039_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CCA1_Q5	0.783	0.826
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.754	0.783
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.754	0.783
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.754	0.783
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.754	0.783
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.754	0.783
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.706	0.674
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.706	0.674
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.706	0.674
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.699	0.674
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.699	0.674
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.699	0.674
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.699	0.674
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.699	0.674
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.699	0.674
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.689	0.652
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.689	0.652
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.689	0.652
mybG M02319_2.00	Dictyostelium discoideum	WAATATCT	AGATATTW	PBM Weirauch et al.(2014) pTH5362	0.665	0.652
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
cassava35529.valid.m1	Myb	70	115	RERWTEDEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFF

Links
Other Myb/SANT family TFs
Other *Manihot esculenta* TFs

492 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O3_07515	Capronia epimyces	A1O3_07515	N	0.000
A1O5_04221	Cladophialophora psammophila	A1O5_04221	N	0.000
AB04375.1	Alternaria brassicicola	AB04375.1	I	0.000
AUEXF2481DRAFT_4398	Aureobasidium subglaciale	AUEXF2481DRAFT_4398	I	0.000
Bcin10g03410	Botrytis cinerea	Bcin10g03410	I	0.000
ANIA_04077	Aspergillus nidulans	CADANIAG00004604	I	0.000
ATEG_03075	Aspergillus terreus	CADATEAG00010055	I	0.000
NFIA_019220	Neosartorya fischeri	CADNFIAG00000884	I	0.000
CIMG_03917	Coccidioides immitis	CIMG_03917	I	0.000
COCC4DRAFT_126547	Bipolaris maydis	COCC4DRAFT_126547	I	0.000
COCCADRAFT_37717	Bipolaris zeicola	COCCADRAFT_37717	I	0.000
COCMIDRAFT_84665	Bipolaris oryzae	COCMIDRAFT_84665	I	0.000
COCSADRAFT_102727	Bipolaris sorokiniana	COCSADRAFT_102727	I	0.000
COCVIDRAFT_34345	Bipolaris victoriae	COCVIDRAFT_34345	I	0.000
CPC735_004330	Coccidioides posadasii	CPC735_004330	I	0.000
DOTSEDRAFT_68166	Dothistroma septosporum	DOTSEDRAFT_68166	I	0.000
DRE_01415	Drechslerella stenobrocha	DRE_01415	I	0.000
EPUS_04985	Endocarpon pusillum	EPUS_04985	I	0.000
EURHEDRAFT_458005	Aspergillus ruber	EURHEDRAFT_458005	I	0.000
e_gw1.00129.236.1	Aspergillus carbonarius	e_gw1.00129.236.1	I	0.000
F503_07914	Ophiostoma piceae uamh	F503_07914	I	0.000
H072_1719	Dactylellina haptotyla	H072_1719	I	0.000
H101_07436	Trichophyton interdigitale	H101_07436	N	0.000
H102_07847	Trichophyton rubrum	H102_07847	N	0.000
H105_07872	Trichophyton soudanense	H105_07872	N	0.000
HCBG_06971	Histoplasma capsulatum	HCBG_06971	I	0.000
LEMA_P018010.1	Leptosphaeria maculans	LEMA_P018010.1	I	0.000
MCYG_00903	Arthroderma otae	MCYG_00903	I	0.000
MCYG_00903	Microsporum canis	MCYG_00903	I	0.000
MPH_05713	Macrophomina phaseolina	MPH_05713	I	0.000
MYCTH_2304200	Myceliophthora thermophila	MYCTH_2304200	I	0.000
OIDMADRAFT_60194	Oidiodendron maius	OIDMADRAFT_60194	I	0.000
PAAG_08645	Paracoccidioides sp lutzii	PAAG_08645	I	0.000
PABG_02907	Paracoccidioides brasiliensis	PABG_02907	I	0.000
Pc18g02200	Penicillium chrysogenum	Pc18g02200	I	0.000
PCH_Pc18g02200	Penicillium rubens	PCH_Pc18g02200	I	0.000
PDE_02765	Penicillium oxalicum	PDE_02765	I	0.000
PDIP_73930	Penicillium digitatum	PDIP_73930	I	0.000
PEX1_076370	Penicillium expansum	PEX1_076370	I	0.000
PITC_027910	Penicillium italicum	PITC_027910	I	0.000
PMAA_024740	Penicillium marneffei	PMAA_024740	I	0.000
PMAA_024740	Talaromyces marneffei	PMAA_024740	I	0.000
PTRG_00243	Pyrenophora triticirepentis	PTRG_00243	I	0.000
PTT_13020	Pyrenophora teres	PTT_13020	I	0.000
PV07_10758	Cladophialophora immunda	PV07_10758	N	0.000
PV09_02665	Verruconis gallopava	PV09_02665	I	0.000
PVAR5_6448	Byssochlamys spectabilis	PVAR5_6448	I	0.000
SAPIO_CDS5850	Scedosporium apiospermum	SAPIO_CDS5850	I	0.000
SBOR_2000	Sclerotinia borealis	SBOR_2000	I	0.000
SETTUDRAFT_102560	Setosphaeria turcica	SETTUDRAFT_102560	I	0.000
SNOG_11811	Phaeosphaeria nodorum	SNOG_11811	I	0.000
SS1G_06977	Sclerotinia sclerotiorum	SS1G_06977	I	0.000
TEQG_01462	Trichophyton equinum	TEQG_01462	N	0.000
TSTA_033430	Talaromyces stipitatus	TSTA_033430	I	0.000
U727_00431293291	Penicillium solitum	U727_00431293291	I	0.000
UCRNP2_6191	Neofusicoccum parvum	UCRNP2_6191	I	0.000
VDAG_06431	Verticillium dahliae	VDAG_06431	I	0.000
W97_02650	Coniosporium apollinis	W97_02650	I	0.000
Z519_03501	Cladophialophora bantiana	Z519_03501	N	0.000

cassava35529.valid.m1 (Manihot esculenta) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

492 Related TFs

cassava35529.valid.m1 **(Manihot esculenta)
Myb/SANT**