Cucsa.304110 (Cucumis sativus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cucsa.304110 T284506_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.714 0.785
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.713 0.785
MYB111
M00882_2.00 		Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN		 PBM
Franco-Zorrilla et al.(2014)
MYB111 		0.690 0.806
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.688 0.785
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.688 0.785
MYB23
M07133_2.00 		Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD		 Dap-seq
OMalley et al.(2016)
MYB23_col_a 		0.663 0.688
WER
M11047_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01 		0.663 0.688
WER
M11048_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$WEREWOLF_Q2 		0.663 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.304110.1 Myb 15 62
Cucsa.304110.1 Myb 68 113

Links

Other Myb/SANT family TFs
Other Cucumis sativus TFs

697 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005479 Calypte anna Aan_R005479 N
BOTBODRAFT_182015 Botryobasidium botryosum BOTBODRAFT_182015 N
CapteG108943 Capitella teleta CapteG108943 N
ARID5A Microcebus murinus ENSMICG00000001964 I
ENSNLEG00000007764 Nomascus leucogenys ENSNLEG00000007764 N
ENSOARG00000013883 Ovis aries ENSOARG00000013883 N
ARID5A Sorex araneus ENSSARG00000003004 I
ARID5B Tursiops truncatus ENSTTRG00000009968 N
Gfo_R015467 Geospiza fortis Gfo_R015467 N
gw1.8.90.1 Volvox carteri gw1.8.90.1 N
MCINX010724 Melitaea cinxia MCINX010724 N
NECAME_01264 Necator americanus NECAME_01264 N
TELCIR_22728 Teladorsagia circumcincta TELCIR_22728 N