Cagra.0050s0017 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.0050s0017 T285929_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.909 1.000
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.909 1.000
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.863 0.891
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.836 0.870
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.836 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.744 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.744 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.744 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.744 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.744 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.738 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.738 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.738 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.730 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0050s0017.1.p Myb 24 69
Cagra.0050s0017.2.p Myb 24 69

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

295 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FOXH1 Bos taurus ENSBTAG00000004761 I
FOXH1 Canis familiaris ENSCAFG00000001632 I
FOXH1 Callithrix jacchus ENSCJAG00000021407 I
FOXH1 Cavia porcellus ENSCPOG00000009899 I
ENSCSAG00000008312 Chlorocebus sabaeus ENSCSAG00000008312 I
Foxh1 Dipodomys ordii ENSDORG00000014524 I
FOXH1 Equus caballus ENSECAG00000011766 I
FOXH1 Erinaceus europaeus ENSEEUG00000005170 I
ENSETEG00000017630 Echinops telfairi ENSETEG00000017630 I
FOXH1 Felis catus ENSFCAG00000023802 I
FOXH1 Homo sapiens ENSG00000160973 D
FOXH1 Gorilla gorilla ENSGGOG00000016271 I
FOXH1 Loxodonta africana ENSLAFG00000030905 I
ENSMICG00000015877 Microcebus murinus ENSMICG00000015877 I
FOXH1 Myotis lucifugus ENSMLUG00000002534 I
FOXH1 Macaca mulatta ENSMMUG00000002663 I
FOXH1 Monodelphis domestica ENSMODG00000010944 I
ENSMPUG00000006130 Mustela putorius furo ENSMPUG00000006130 I
Foxh1 Mus musculus ENSMUSG00000033837 I
ENSNLEG00000010824 Nomascus leucogenys ENSNLEG00000010824 I
ENSOARG00000012986 Ovis aries ENSOARG00000012986 I
FOXH1 Oryctolagus cuniculus ENSOCUG00000023626 I
FOXH1 Otolemur garnettii ENSOGAG00000012998 I
ENSP00000366534-D1 Bos grunniens ENSP00000366534-D1 I
ENSPANG00000024706 Papio anubis ENSPANG00000024706 I
ENSPPYG00000018979 Pongo abelii ENSPPYG00000018979 I
FOXH1 Pan troglodytes ENSPTRG00000020706 I
FOXH1 Pteropus vampyrus ENSPVAG00000006770 I
Foxh1 Rattus norvegicus ENSRNOG00000015371 I
ENSSHAG00000008705 Sarcophilus harrisii ENSSHAG00000008705 I
FOXH1 Sus scrofa ENSSSCG00000005902 I
ENSSTOG00000010104 Ictidomys tridecemlineatus ENSSTOG00000010104 I
FOXH1 Tursiops truncatus ENSTTRG00000001949 I
FOXH1 Vicugna pacos ENSVPAG00000003169 I
Myotis_brandtii_FOXH1_10006474 Myotis brandtii Myotis_brandtii_FOXH1_10006474 I
Ogr08569 Ophisaurus gracilis Ogr08569 I
Pvit_18746 Pogona vitticeps Pvit_18746 I
foxh1 Xenopus tropicalis XB-GENE-1194372 I
foxh1.L Xenopus laevis XB-GENE-1194377 I
foxh1.2.L Xenopus laevis XB-GENE-6461998 I