Cagra.1317s0071 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.1317s0071 T286029_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.909 0.979
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.901 0.957
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.901 0.957
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.891 0.957
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.849 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1317s0071.1.p Myb 468 518

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

197 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_06344 Capronia coronata A1O1_06344 N
A1O5_08668 Cladophialophora psammophila A1O5_08668 N
A1O7_06488 Cladophialophora yegresii A1O7_06488 N
A1O9_07634 Exophiala aquamarina A1O9_07634 N
G647_06048 Cladophialophora carrionii G647_06048 N
HMPREF1120_03979 Exophiala dermatitidis HMPREF1120_03979 N
HMPREF1541_08519 Cyphellophora europaea HMPREF1541_08519 N
PV04_06895 Capronia semiimmersa PV04_06895 N
PV05_07865 Exophiala xenobiotica PV05_07865 N
PV06_10105 Exophiala oligosperma PV06_10105 N
PV07_03720 Cladophialophora immunda PV07_03720 N
PV08_08165 Exophiala spinifera PV08_08165 N
PV10_08229 Exophiala mesophila PV10_08229 N
PV11_06892 Exophiala sideris PV11_06892 N
W97_00406 Coniosporium apollinis W97_00406 N
Z519_03990 Cladophialophora bantiana Z519_03990 N