CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cagra.6594s0025 *(Capsella grandiflora)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Cagra.6594s0025	T286181_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RVE5 M01079_2.00	Arabidopsis thaliana	NWAATATCHN	NDGATATTWN	PBM Sullivan et al.(2014) pTH7138	0.875	0.978
RVE5 M07100_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At4g01280_col_a	0.875	0.978
RVE5 M07101_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At4g01280_colamp_a	0.875	0.978
PK02532.1 M02347_2.00	Cannabis sativa	WAATATCTN	NAGATATTW	PBM Weirauch et al.(2014) pTH9579	0.837	0.913
RVE8 M01074_2.00	Arabidopsis thaliana	NNNRWATCNN	NNGATWYNNN	PBM Sullivan et al.(2014) pTH7136	0.829	0.891
RVE8 M07069_2.00	Arabidopsis thaliana	NHNWAAATATCT	AGATATTTWNDN	Dap-seq OMalley et al.(2016) At3g09600_col_a	0.829	0.891
RVE8 M07070_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) At3g09600_colamp_a	0.829	0.891
RVE4 M07117_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LCL1_colamp_a	0.829	0.891
RVE4 M07118_2.00	Arabidopsis thaliana	NAAAATATCT	AGATATTTTN	Dap-seq OMalley et al.(2016) LCL1_col	0.829	0.891
RVE6 M01081_2.00	Arabidopsis thaliana	AATATCTD	HAGATATT	PBM Sullivan et al.(2014) pTH7151	0.827	0.891
RVE6 M07138_2.00	Arabidopsis thaliana	NNAAAATATCT	AGATATTTTNN	Dap-seq OMalley et al.(2016) At5g52660_col_a	0.827	0.891
RVE6 M07139_2.00	Arabidopsis thaliana	NNNWAAATATCT	AGATATTTWNNN	Dap-seq OMalley et al.(2016) At5g52660_colamp_a	0.827	0.891
mybG M02319_2.00	Dictyostelium discoideum	WAATATCT	AGATATTW	PBM Weirauch et al.(2014) pTH5362	0.808	0.870
PK08316.1 M02350_2.00	Cannabis sativa	NNNRWATCNN	NNGATWYNNN	PBM Weirauch et al.(2014) pTH9488	0.747	0.717
RVE1 M00879_2.00	Arabidopsis thaliana	AAATATCT	AGATATTT	PBM Franco-Zorrilla et al.(2014) RVE1	0.711	0.674
RVE1 M07128_2.00	Arabidopsis thaliana	NNNWAAATATCTNN	NNAGATATTTWNNN	Dap-seq OMalley et al.(2016) RVE1_col_a	0.711	0.674
RVE1 M07129_2.00	Arabidopsis thaliana	NNWAATATCW	WGATATTWNN	Dap-seq OMalley et al.(2016) RVE1_colamp_a	0.711	0.674
OS08G0157600 M02330_2.00	Oryza sativa	DNRTATCHN	NDGATAYNH	PBM Weirauch et al.(2014) pTH7793	0.691	0.674
LHY M06997_2.00	Arabidopsis thaliana	NWAAATATCT	AGATATTTWN	Dap-seq OMalley et al.(2016) LHY1_col_a	0.681	0.652
LHY M06998_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) LHY1_colamp_a	0.681	0.652
RVE7 M01069_2.00	Arabidopsis thaliana	NDHRWATCNN	NNGATWYDHN	PBM Sullivan et al.(2014) pTH7081	0.668	0.609
RVE7 M02286_2.00	Arabidopsis thaliana	NDARTATCH	DGATAYTHN	PBM Weirauch et al.(2014) pTH7277	0.668	0.609
RVE7L M07071_2.00	Arabidopsis thaliana	NNNNWAAATATCWNN	NNWGATATTTWNNNN	Dap-seq OMalley et al.(2016) AT3G10113_col_a	0.668	0.609
RVE7 M07008_2.00	Arabidopsis thaliana	NNWAAATATCT	AGATATTTWNN	Dap-seq OMalley et al.(2016) EPR1_colamp_a	0.668	0.609
RVE7 M07009_2.00	Arabidopsis thaliana	NWAAATATCTHN	NDAGATATTTWN	Dap-seq OMalley et al.(2016) EPR1_col	0.668	0.609
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cagra.6594s0025.1.p	Myb	80	125	RENWTEQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYF
Cagra.6594s0025.2.p	Myb	80	125	RENWTEQEHDKFLEALHLFDRDWKKIEAFVGSKTVVQIRSHAQKYF

Links
Other Myb/SANT family TFs
Other *Capsella grandiflora* TFs

431 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
fgeneshPB_pg.30__130	Phycomyces blakesleeanus	fgeneshPB_pg.30__130	N	0.000
KLLA0_F26961g	Kluyveromyces lactis	KLLA0_F26961g	D	0.000
KLTH0D08734g	Lachancea thermotolerans	KLTH0D08734g	I	0.000
KLTH0D08734g	Kluyveromyces thermotolerans	KLTH0D08734g	I	0.000
KUCA_T00000741001	Kuraishia capsulata	KUCA_T00000741001	I	0.000
Kwal_8351	Kluyveromyces waltii	Kwal_8351	I	0.000
LALA0_S09e05358g	Lachancea lanzarotensis	LALA0_S09e05358g	I	0.000
PAS_chr2-1_0723	Komagataella pastoris	PAS_chr2-1_0723	I	0.000
SAKL0B11330g	Lachancea kluyveri	SAKL0B11330g	I	0.000
TPHA_0C02580	Tetrapisispora phaffii	TPHA_0C02580	I	0.000
XP_002491652.1	Pichia pastoris	XP_002491652.1	I	0.000

Cagra.6594s0025 (Capsella grandiflora) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

431 Related TFs

Cagra.6594s0025 **(Capsella grandiflora)
Myb/SANT**