CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Eucgr.D00972 *(Eucalyptus grandis)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00249 (Myb_DNA-binding)	IPR014778	Eucgr.D00972	T286816_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PHL7 M02292_2.00	Arabidopsis thaliana	NWGATDCBNN	NNVGHATCWN	PBM Weirauch et al.(2014) pTH7253	0.891	0.957
PK10342.1 M02351_2.00	Cannabis sativa	WAGATKCS	SGMATCTW	PBM Weirauch et al.(2014) pTH9489	0.891	0.957
PHL7 M07040_2.00	Arabidopsis thaliana	DRNAKATTCBNHNNN	NNNDNVGAATMTNYH	Dap-seq OMalley et al.(2016) At2g01060_colamp_a	0.891	0.957
PHL7 M07041_2.00	Arabidopsis thaliana	VGAATATTCBNHH	DDNVGAATATTCB	Dap-seq OMalley et al.(2016) At2g01060_col	0.891	0.957
Q5IWM2_WHEAT M11059_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$MYB80_01	0.802	0.894
AT3G24120 M00729_2.00	Arabidopsis thaliana	NNKATDCBNN	NNVGHATMNN	PBM Chang et al.(2013) pTH7086	0.754	0.766
UNE16 M01270_2.00	Arabidopsis thaliana	NWKATTCBNN	NNVGAATMWN	PBM Lambert et al.(2019) pTH9967	0.754	0.766
AT3G24120 M07085_2.00	Arabidopsis thaliana	HAKATTCB	VGAATMTD	Dap-seq OMalley et al.(2016) At3g24120_col_a	0.754	0.766
AT3G24120 M07086_2.00	Arabidopsis thaliana	NDRAAKATTCBHHN	NDDVGAATMTTYHN	Dap-seq OMalley et al.(2016) At3g24120_colamp_a	0.754	0.766
MYR1 M02309_2.00	Arabidopsis thaliana	NKATNCBNNN	NNNVGNATMN	PBM Weirauch et al.(2014) pTH8859	0.725	0.745
MYR2 M02294_2.00	Arabidopsis thaliana	NKATDCBNN	NNVGHATMN	PBM Weirauch et al.(2014) pTH7097	0.719	0.723
MYR2 M07063_2.00	Arabidopsis thaliana	NNDAAKATTCYHHN	NDDRGAATMTTHNN	Dap-seq OMalley et al.(2016) At3g04030_col_a	0.719	0.723
MYR2 M07064_2.00	Arabidopsis thaliana	VRAAKATTCBHWNNN	NNNWDVGAATMTTYB	Dap-seq OMalley et al.(2016) At3g04030_colamp_a	0.719	0.723
PHL1 M02310_2.00	Arabidopsis thaliana	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7122	0.717	0.723
PHL1 M07132_2.00	Arabidopsis thaliana	MDRGAATATTCBNWN	NWNVGAATATTCYHK	Dap-seq OMalley et al.(2016) At5g29000_col_a	0.717	0.723
PHL12 M01077_2.00	Arabidopsis thaliana	NWKATTCBNN	NNVGAATMWN	PBM Sullivan et al.(2014) pTH7098	0.712	0.766
PHL12 M07079_2.00	Arabidopsis thaliana	RGAATATTCYYTWN	NWARRGAATATTCY	Dap-seq OMalley et al.(2016) At3g12730_col_a	0.712	0.766
PHL12 M07080_2.00	Arabidopsis thaliana	NNRAAKATTCBHHN	NDDVGAATMTTYNN	Dap-seq OMalley et al.(2016) At3g12730_colamp_a	0.712	0.766
PHL11 M07134_2.00	Arabidopsis thaliana	NNRAAKATTCYHHN	NDDRGAATMTTYNN	Dap-seq OMalley et al.(2016) AT5G45580_col_a	0.706	0.830
PHL11 M07135_2.00	Arabidopsis thaliana	NRAAKATTCYHHNN	NNDDRGAATMTTYN	Dap-seq OMalley et al.(2016) AT5G45580_colamp_a	0.706	0.830
AT2G20400 M07046_2.00	Arabidopsis thaliana	NDNNDNHNNVDDDNNNHAWRGMATATTCB	VGAATATKCYWTDNNNHHHBNNDNHNNHN	Dap-seq OMalley et al.(2016) AT2G20400_col_a	0.686	0.766
AT2G20400 M07047_2.00	Arabidopsis thaliana	RDRGAATATTCBNWD	HWNVGAATATTCYHY	Dap-seq OMalley et al.(2016) AT2G20400_colamp_a	0.686	0.766
PHL6 M02295_2.00	Arabidopsis thaliana	NNWKATNCBN	NVGNATMWNN	PBM Weirauch et al.(2014) pTH7071	0.672	0.702
PHL6 M07083_2.00	Arabidopsis thaliana	NDGAAAACH	DGTTTTCHN	Dap-seq OMalley et al.(2016) At3g13040_col_b	0.672	0.702
PHR1 M02302_2.00	Arabidopsis thaliana	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7249	0.667	0.745
PHR1 M02329_2.00	Oryza sativa	NWKATNCBNN	NNVGNATMWN	PBM Weirauch et al.(2014) pTH7755	0.667	0.745
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Eucgr.D00972.1	Myb	51	102	RLRWTHDLHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR
Eucgr.D00972.2	Myb	51	102	RLRWTHDLHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR
Eucgr.D00972.3	Myb	51	102	RLRWTHDLHDRFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR

Links
Other Myb/SANT family TFs
Other *Eucalyptus grandis* TFs

926 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZNF275	Canis familiaris	ENSCAFG00000019184	N
ZNF275	Callithrix jacchus	ENSCJAG00000019468	N
ENSCSAG00000006968	Chlorocebus sabaeus	ENSCSAG00000006968	N
Zfp275	Dipodomys ordii	ENSDORG00000016148	N
ZNF275	Equus caballus	ENSECAG00000014611	N
ZNF275	Felis catus	ENSFCAG00000004665	N
ZNF275	Homo sapiens	ENSG00000063587	N
ZNF275	Gorilla gorilla	ENSGGOG00000010898	N
ZNF275	Microcebus murinus	ENSMICG00000009443	N
ZNF275	Macaca mulatta	ENSMMUG00000013386	N
ENSMMUP00000017586	Macaca fascicularis	ENSMMUP00000017586	N
ENSMPUG00000019555	Mustela putorius furo	ENSMPUG00000019555	N
Zfp275	Mus musculus	ENSMUSG00000031365	N
ENSNLEG00000000098	Nomascus leucogenys	ENSNLEG00000000098	N
ZNF275	Otolemur garnettii	ENSOGAG00000031649	N
ENSPANG00000015246	Papio anubis	ENSPANG00000015246	N
ENSPPYG00000020839	Pongo abelii	ENSPPYG00000020839	N
ZNF275	Pan troglodytes	ENSPTRG00000022394	N
ZNF275	Pteropus vampyrus	ENSPVAG00000002965	N
Zfp275	Rattus norvegicus	ENSRNOG00000061073	N
ENSSSCG00000021789	Sus scrofa	ENSSSCG00000021789	N
ENSSTOG00000022633	Ictidomys tridecemlineatus	ENSSTOG00000022633	N

Eucgr.D00972 (Eucalyptus grandis) Myb/SANT

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

926 Related TFs

Eucgr.D00972 **(Eucalyptus grandis)
Myb/SANT**