evm.TU.supercontig_119.55 (Carica papaya)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 evm.TU.supercontig_119.55 T287043_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.866 0.946
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.720 0.731
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.713 0.656
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.713 0.656
ATMYB121
M07091_2.00 		Arabidopsis thaliana
NYNWACCTAMYHHH
DDDRKTAGGTWNRN		 Dap-seq
OMalley et al.(2016)
MYB121_col_a 		0.712 0.688
MYB116
M07014_2.00 		Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN		 Dap-seq
OMalley et al.(2016)
MYB116_col_a 		0.673 0.624
MYB116
M07015_2.00 		Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND		 Dap-seq
OMalley et al.(2016)
MYB116_colamp_a 		0.673 0.624
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.673 0.731
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.673 0.731
MYB108
M07065_2.00 		Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY		 Dap-seq
OMalley et al.(2016)
BOS1_col_a 		0.668 0.645
MYB27
M07097_2.00 		Arabidopsis thaliana
HHTACCTAAYTTWWN
NWWAARTTAGGTADD		 Dap-seq
OMalley et al.(2016)
MYB27_col_a 		0.662 0.624
MYB27
M07098_2.00 		Arabidopsis thaliana
NYHTACCTAAYTTWHN
NDWAARTTAGGTADRN		 Dap-seq
OMalley et al.(2016)
MYB27_colamp_a 		0.662 0.624
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_119.55 Myb 24 71
evm.model.supercontig_119.55 Myb 77 122

Links

Other Myb/SANT family TFs
Other Carica papaya TFs

924 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA003725 Oryza indica BGIOSGA003725 N
BGIOSGA027713 Oryza indica BGIOSGA027713 N
GRMZM5G895313 Zea mays GRMZM5G895313 N
LPERR08G02000 Leersia perrieri LPERR08G02000 N
OBART01G18890 Oryza barthii OBART01G18890 N
OBART03G12460 Oryza barthii OBART03G12460 N
OBART05G23340 Oryza barthii OBART05G23340 N
OGLUM01G22480 Oryza glumaepatula OGLUM01G22480 N
OGLUM03G12500 Oryza glumaepatula OGLUM03G12500 N
OGLUM05G24680 Oryza glumaepatula OGLUM05G24680 N
OGLUM08G01920 Oryza glumaepatula OGLUM08G01920 N
OLONG_014001 Oryza longistaminata OLONG_014001 N
OLONG_015117 Oryza longistaminata OLONG_015117 N
OMERI08G01940 Oryza meridionalis OMERI08G01940 N
ONIVA01G18720 Oryza nivara ONIVA01G18720 N
ONIVA01G21440 Oryza nivara ONIVA01G21440 N
ONIVA05G24030 Oryza nivara ONIVA05G24030 N
ONIVA08G01720 Oryza nivara ONIVA08G01720 N
ORGLA01G0154500 Oryza glaberrima ORGLA01G0154500 N
ORGLA08G0012100 Oryza glaberrima ORGLA08G0012100 N
ORUFI01G21290 Oryza rufipogon ORUFI01G21290 N
ORUFI03G13150 Oryza rufipogon ORUFI03G13150 N
ORUFI05G24780 Oryza rufipogon ORUFI05G24780 N
ORUFI08G02050 Oryza rufipogon ORUFI08G02050 N
OS03G0277800 Oryza sativa OS03G0277800 N
OS05G0524666 Oryza sativa OS05G0524666 N
OS08G0129200 Oryza sativa OS08G0129200 N