evm.TU.supercontig_13.247 (Carica papaya)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 evm.TU.supercontig_13.247 T287060_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00 		Physcomitrella patens
NNHNATCBN
NVGATNDNN		 PBM
Weirauch et al.(2014)
pTH8492 		0.776 0.766
PK17526.1
M02353_2.00 		Cannabis sativa
NNTTATCCAN
NTGGATAANN		 PBM
Weirauch et al.(2014)
pTH9588 		0.758 0.745
AT3G16350
M01078_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Sullivan et al.(2014)
pTH7149 		0.756 0.723
PK23829.1
M02355_2.00 		Cannabis sativa
VTTATCCD
HGGATAAB		 PBM
Weirauch et al.(2014)
pTH9592 		0.747 0.723
PK29550.1
M02358_2.00 		Cannabis sativa
NNHDATCYNN
NNRGATHDNN		 PBM
Weirauch et al.(2014)
pTH9595 		0.745 0.702
AT5G61620
M07149_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWWN
NWWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
AT5G61620_col_a 		0.726 0.745
AT5G61620
M07150_2.00 		Arabidopsis thaliana
YHTTATCCAHW
WDTGGATAADR		 Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a 		0.726 0.745
KUA1
M02312_2.00 		Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN		 PBM
Weirauch et al.(2014)
pTH7647 		0.718 0.723
KUA1
M07136_2.00 		Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW		 Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a 		0.718 0.723
KUA1
M07137_2.00 		Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD		 Dap-seq
OMalley et al.(2016)
At5g47390_col_b 		0.718 0.723
AT1G74840
M02291_2.00 		Arabidopsis thaliana
NGWTATCCRNN
NNYGGATAWCN		 PBM
Weirauch et al.(2014)
pTH7074 		0.698 0.723
AT1G74840
M07037_2.00 		Arabidopsis thaliana
HHTTATCCAHW
WDTGGATAADD		 Dap-seq
OMalley et al.(2016)
At1g74840_col100_a 		0.698 0.723
AT1G74840
M07038_2.00 		Arabidopsis thaliana
HWNHTTATCCAHWW
WWDTGGATAADNWD		 Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a 		0.698 0.723
AT1G19000
M02287_2.00 		Arabidopsis thaliana
NYTATCYDNN
NNHRGATARN		 PBM
Weirauch et al.(2014)
pTH7120 		0.698 0.681
AT1G19000
M07012_2.00 		Arabidopsis thaliana
HDYHTTATCCAHWW
WWDTGGATAADRHD		 Dap-seq
OMalley et al.(2016)
At1g19000_col_a 		0.698 0.681
AT1G19000
M07013_2.00 		Arabidopsis thaliana
WDYNTTATCCAHWW
WWDTGGATAANRHW		 Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a 		0.698 0.681
PK00738.1
M02346_2.00 		Cannabis sativa
NYWATCYDNN
NNHRGATWRN		 PBM
Weirauch et al.(2014)
pTH9487 		0.697 0.681
0600010132
M02360_2.00 		Ostreococcus tauri
NNVTTATCCDNNN
NNNHGGATAABNN		 PBM
Weirauch et al.(2014)
pTH9441 		0.679 0.702
AT5G56840
M07144_2.00 		Arabidopsis thaliana
WWYMTTATCCAWWWN
NWWWTGGATAAKRWW		 Dap-seq
OMalley et al.(2016)
AT5G56840_col_a 		0.667 0.702
AT5G56840
M07145_2.00 		Arabidopsis thaliana
HHHWWYHTTATCCWHW
WDWGGATAADRWWDDD		 Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a 		0.667 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_13.247 Myb 164 212

Links

Other Myb/SANT family TFs
Other Carica papaya TFs

488 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008906 Calypte anna Aan_R008906 I
Afo_R002309 Aptenodytes forsteri Afo_R002309 I
Alligator_sinensis_CCG015770.1 Alligator sinensis Alligator_sinensis_CCG015770.1 I
Brh_R007720 Buceros rhinoceros Brh_R007720 I
Cmyd_10004342 Chelonia mydas Cmyd_10004342 I
CREB3L1 Anolis carolinensis ENSACAG00000004538 I
ENSAMEG00000006633 Ailuropoda melanoleuca ENSAMEG00000006633 I
ENSAMXG00000021541 Astyanax mexicanus ENSAMXG00000021541 I
ENSAPLG00000000926 Anas platyrhynchos ENSAPLG00000000926 I
CREB3L1 Bos taurus ENSBTAG00000006143 I
CREB3L1 Canis familiaris ENSCAFG00000009282 I
CREB3L1 Callithrix jacchus ENSCJAG00000011726 I
CREB3L1 Cavia porcellus ENSCPOG00000010073 I
ENSCSAG00000005658 Chlorocebus sabaeus ENSCSAG00000005658 I
creb3l1 Danio rerio ENSDARG00000015793 I
CREB3L1 Dasypus novemcinctus ENSDNOG00000010500 I
CREB3L1 Equus caballus ENSECAG00000018306 I
ENSFALG00000006242 Ficedula albicollis ENSFALG00000006242 I
CREB3L1 Felis catus ENSFCAG00000018794 I
CREB3L1 Homo sapiens ENSG00000157613 D
CREB3L1 Gallus gallus ENSGALG00000008393 I
CREB3L1 Gorilla gorilla ENSGGOG00000015181 I
CREB3L1 Loxodonta africana ENSLAFG00000005092 I
ENSLOCG00000005600 Lepisosteus oculatus ENSLOCG00000005600 I
ENSMEUG00000002178 Macropus eugenii ENSMEUG00000002178 I
CREB3L1 Meleagris gallopavo ENSMGAG00000011042 I
CREB3L1 Myotis lucifugus ENSMLUG00000009820 I
CREB3L1 Macaca mulatta ENSMMUG00000018571 I
CREB3L1 Monodelphis domestica ENSMODG00000019888 I
ENSMPUG00000005639 Mustela putorius furo ENSMPUG00000005639 I
ENSNLEG00000014012 Nomascus leucogenys ENSNLEG00000014012 I
CREB3L1 Oryctolagus cuniculus ENSOCUG00000004418 I
CREB3L1 Otolemur garnettii ENSOGAG00000008829 I
ENSONIG00000015219 Oreochromis niloticus ENSONIG00000015219 I
ENSP00000288400 Macaca fascicularis ENSP00000288400 I
ENSP00000288400-D1 Bos grunniens ENSP00000288400-D1 I
ENSPANG00000015384 Papio anubis ENSPANG00000015384 I
CREB3L1 Procavia capensis ENSPCAG00000006313 I
ENSPFOG00000007076 Poecilia formosa ENSPFOG00000007076 I
ENSPPYG00000003324 Pongo abelii ENSPPYG00000003324 I
ENSPSIG00000004461 Pelodiscus sinensis ENSPSIG00000004461 I
CREB3L1 Pan troglodytes ENSPTRG00000003543 I
CREB3L1 Pteropus vampyrus ENSPVAG00000016161 I
CREB3L1 Sorex araneus ENSSARG00000011036 I
ENSSHAG00000015230 Sarcophilus harrisii ENSSHAG00000015230 I
CREB3L1 Sus scrofa ENSSSCG00000013263 I
ENSSTOG00000012697 Ictidomys tridecemlineatus ENSSTOG00000012697 I
CREB3L1 Taeniopygia guttata ENSTGUG00000010669 I
ENSTRUG00000007014 Takifugu rubripes ENSTRUG00000007014 I
CREB3L1 Tursiops truncatus ENSTTRG00000016515 I
CREB3L1 Vicugna pacos ENSVPAG00000008868 I
ENSXMAG00000004363 Xiphophorus maculatus ENSXMAG00000004363 I
Gfo_R014160 Geospiza fortis Gfo_R014160 I
Myotis_brandtii_CREB3L1_10025503 Myotis brandtii Myotis_brandtii_CREB3L1_10025503 I
Ogr17869 Ophisaurus gracilis Ogr17869 I
Pvit_08659 Pogona vitticeps Pvit_08659 I
Tal_R007836 Tyto alba Tal_R007836 I