gene19228-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene19228-v1.0-hybrid T287341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.875 0.957
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.867 0.935
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.867 0.935
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.867 0.935
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.867 0.935
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.867 0.935
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.865 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.865 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.865 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.852 0.891
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.837 0.935
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.837 0.935
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.837 0.935
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.704 0.674
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.704 0.674
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.704 0.674
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.672 0.674
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna19228.1-v1.0-hybrid Myb 70 115

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

306 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AACERI_AaceriACR209W Saccharomycetaceae sp ashbya aceri AACERI_AaceriACR209W N
AGOS_ACR209W Ashbya gossypii AGOS_ACR209W N
CORT_0C03980 Candida orthopsilosis CORT_0C03980 N
CPAG_00585 Candida parapsilosis CPAG_00585 N
CTRG_02481 Candida tropicalis CTRG_02481 N
DEHA2G13574g Debaryomyces hansenii DEHA2G13574g N
E5Q_00121 Mixia osmundae E5Q_00121 N
Ecym_4635 Eremothecium cymbalariae Ecym_4635 N
estExt_fgenesh1_pg.C_chr_1.20163 Pichia stipitis estExt_fgenesh1_pg.C_chr_1.20163 N
fgenesh1_pm.00855_#_4 Aspergillus carbonarius fgenesh1_pm.00855_#_4 I
G210_4113 Candida maltosa G210_4113 N
HPODL_04995 Ogataea parapolymorpha HPODL_04995 N
KLLA0_E02663g Kluyveromyces lactis KLLA0_E02663g N
KUCA_T00003666001 Kuraishia capsulata KUCA_T00003666001 N
LELG_02686 Lodderomyces elongisporus LELG_02686 N
MAC_05754 Metarhizium acridum MAC_05754 N
MAJ_06026 Metarhizium majus MAJ_06026 N
MANI_026746 Metarhizium anisopliae MANI_026746 N
MBR_06789 Metarhizium brunneum MBR_06789 N
MGU_04577 Metarhizium guizhouense MGU_04577 N
MVLG_02849 Microbotryum violaceum MVLG_02849 N
PAS_chr3_0084 Komagataella pastoris PAS_chr3_0084 N
PEX1_086330 Penicillium expansum PEX1_086330 N
PICST_66618 Scheffersomyces stipitis PICST_66618 N
RHTO_03909 Rhodosporidium toruloides RHTO_03909 N
X797_000005 Metarhizium robertsii X797_000005 N
XP_002492295.1 Pichia pastoris XP_002492295.1 N