Pavir.Ab02717 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Ab02717 T288998_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.854 0.826
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.854 0.826
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.854 0.826
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.854 0.826
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.854 0.826
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.836 0.870
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.836 0.870
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.827 0.826
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.800 0.783
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.781 0.761
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.781 0.761
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.740 0.761
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.740 0.761
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.740 0.761
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02717.1.p Myb 49 94

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

288 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF454 Bos taurus ENSBTAG00000004262 I
ENSBTAP00000016859-D1 Bos grunniens ENSBTAP00000016859-D1 I
ZNF454 Canis familiaris ENSCAFG00000031168 I
ZNF454 Choloepus hoffmanni ENSCHOG00000002770 I
ZNF454 Callithrix jacchus ENSCJAG00000018857 I
ENSCSAG00000008562 Chlorocebus sabaeus ENSCSAG00000008562 I
ZNF454 Equus caballus ENSECAG00000005115 I
ZNF454 Erinaceus europaeus ENSEEUG00000007684 I
ZNF454 Felis catus ENSFCAG00000021971 I
ZNF454 Homo sapiens ENSG00000178187 D
ZNF454 Gorilla gorilla ENSGGOG00000022508 I
ZNF454 Myotis lucifugus ENSMLUG00000002894 I
ENSMMUG00000008980 Macaca mulatta ENSMMUG00000008980 I
ENSMPUG00000000725 Mustela putorius furo ENSMPUG00000000725 I
Zfp454 Mus musculus ENSMUSG00000048728 I
ENSNLEG00000001430 Nomascus leucogenys ENSNLEG00000001430 I
ENSOARG00000004411 Ovis aries ENSOARG00000004411 I
ZNF454 Oryctolagus cuniculus ENSOCUG00000029119 I
ENSP00000326249 Macaca fascicularis ENSP00000326249 I
ENSPANG00000009509 Papio anubis ENSPANG00000009509 I
ZNF454 Pan troglodytes ENSPTRG00000017611 I
ZNF454 Pteropus vampyrus ENSPVAG00000007676 I
Znf454 Rattus norvegicus ENSRNOG00000022971 I
ZNF454 Sus scrofa ENSSSCG00000027351 I
ZNF454 Tupaia belangeri ENSTBEG00000000346 I
ZNF454 Tursiops truncatus ENSTTRG00000012880 I