Pavir.Gb01315 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb01315 T289234_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.823 0.830
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.823 0.830
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.823 0.830
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.823 0.830
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.823 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb01315.1.p Myb 568 618
Pavir.Gb01315.2.p Myb 568 618

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00464 Capronia coronata A1O1_00464 N
A1O1_02535 Capronia coronata A1O1_02535 N
CADAFLAG00003334 Aspergillus flavus CADAFLAG00003334 N
ANIA_01584 Aspergillus nidulans CADANIAG00008217 N
ATEG_06092 Aspergillus terreus CADATEAG00000839 N
CFIO01_01654 Colletotrichum fioriniae CFIO01_01654 N
COCC4DRAFT_157715 Bipolaris maydis COCC4DRAFT_157715 N
COCCADRAFT_34908 Bipolaris zeicola COCCADRAFT_34908 N
COCSADRAFT_130198 Bipolaris sorokiniana COCSADRAFT_130198 N
COCVIDRAFT_107313 Bipolaris victoriae COCVIDRAFT_107313 N
F503_03308 Ophiostoma piceae uamh F503_03308 N
fgenesh1_pg.sca_32_chr11_3_0000153 Nectria haematococca fgenesh1_pg.sca_32_chr11_3_0000153 N
HMPREF1120_00198 Exophiala dermatitidis HMPREF1120_00198 N
HMPREF1120_04953 Exophiala dermatitidis HMPREF1120_04953 N
HMPREF1120_05596 Exophiala dermatitidis HMPREF1120_05596 I
HMPREF1624_03990 Sporothrix schenckii HMPREF1624_03990 N
KLLA0_D10197g Kluyveromyces lactis KLLA0_D10197g I
KUCA_T00000009001 Kuraishia capsulata KUCA_T00000009001 N
KUCA_T00000013001 Kuraishia capsulata KUCA_T00000013001 N
KUCA_T00003984001 Kuraishia capsulata KUCA_T00003984001 N
KUCA_T00003996001 Kuraishia capsulata KUCA_T00003996001 N
KUCA_T00004747001 Kuraishia capsulata KUCA_T00004747001 N
KUCA_T00005495001 Kuraishia capsulata KUCA_T00005495001 N
MAC_06969 Metarhizium acridum MAC_06969 N
MAJ_08159 Metarhizium majus MAJ_08159 N
MBR_08966 Metarhizium brunneum MBR_08966 N
MGG_14816 Magnaporthe oryzae MGG_14816 N
MGU_09044 Metarhizium guizhouense MGU_09044 N
NechaG86758 Fusarium solani NechaG86758 N
Pc13g03330 Penicillium chrysogenum Pc13g03330 N
Pc14g01370 Penicillium chrysogenum Pc14g01370 N
PCH_Pc13g03330 Penicillium rubens PCH_Pc13g03330 N
PCH_Pc14g01370 Penicillium rubens PCH_Pc14g01370 N
PDE_02517 Penicillium oxalicum PDE_02517 N
PEX1_062920 Penicillium expansum PEX1_062920 N
PFICI_00049 Pestalotiopsis fici PFICI_00049 N
PTRG_10883 Pyrenophora triticirepentis PTRG_10883 N
PTT_06689 Pyrenophora teres PTT_06689 N
PV04_07764 Capronia semiimmersa PV04_07764 N
PV05_04423 Exophiala xenobiotica PV05_04423 N
PV06_07837 Exophiala oligosperma PV06_07837 N
PV08_03348 Exophiala spinifera PV08_03348 N
PV11_03278 Exophiala sideris PV11_03278 N
U727_00432581551 Penicillium solitum U727_00432581551 N
VHEMI00089 Torrubiella hemipterigena VHEMI00089 N
X797_009392 Metarhizium robertsii X797_009392 N