Pavir.J07446 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J07446 T289341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.760 0.897
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.760 0.897
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.698 0.851
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J07446.1.p Myb 40 87
Pavir.J07446.1.p Myb 93 132

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

277 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28154.m000040 Ricinus communis 28154.m000040 I 0.718
29602.m000218 Ricinus communis 29602.m000218 I 0.748
AMTR_s00005p00268890 Amborella trichopoda AMTR_s00005p00268890 I 0.672
AMTR_s00055p00057500 Amborella trichopoda AMTR_s00055p00057500 I 0.736
AMTR_s00139p00079430 Amborella trichopoda AMTR_s00139p00079430 I 0.748
Aquca_006_00250 Aquilegia coerulea Aquca_006_00250 I 0.727
MYB3 Arabidopsis thaliana AT1G22640 D 0.698
MYB8 Arabidopsis thaliana AT1G35515 I 0.661
MYB7 Arabidopsis thaliana AT2G16720 I 0.722
MYB6 Arabidopsis thaliana AT4G09460 I 0.720
MYB32 Arabidopsis thaliana AT4G34990 I 0.692
MYB4 Arabidopsis thaliana AT4G38620 D 0.760
BGIOSGA004902 Oryza indica BGIOSGA004902 I 0.783
BGIOSGA018002 Oryza indica BGIOSGA018002 I 0.785
BGIOSGA026525 Oryza indica BGIOSGA026525 I 0.747
BGIOSGA026527 Oryza indica BGIOSGA026527 I 0.747
BGIOSGA029363 Oryza indica BGIOSGA029363 I 0.748
BGIOSGA034924 Oryza indica BGIOSGA034924 I 0.748
Bo1g006820 Brassica oleracea Bo1g006820 I 0.695
Bo3g044210 Brassica oleracea Bo3g044210 I 0.694
Bo3g091600 Brassica oleracea Bo3g091600 I 0.746
Bo3g149450 Brassica oleracea Bo3g149450 I 0.748
Bo5g038720 Brassica oleracea Bo5g038720 I 0.679
Bo7g057770 Brassica oleracea Bo7g057770 I 0.698
Bo7g117140 Brassica oleracea Bo7g117140 I 0.667
Bo7g119670 Brassica oleracea Bo7g119670 I 0.757
Bo8g071580 Brassica oleracea Bo8g071580 I 0.698
Bostr.12659s0116 Boechera stricta Bostr.12659s0116 I 0.695
Bostr.18351s0132 Boechera stricta Bostr.18351s0132 I 0.722
Bostr.25463s0384 Boechera stricta Bostr.25463s0384 I 0.717
Bostr.25542s0045 Boechera stricta Bostr.25542s0045 I 0.757
Bostr.7867s1358 Boechera stricta Bostr.7867s1358 I 0.692
Bra000680 Brassica rapa Bra000680 I 0.694
Bra010736 Brassica rapa Bra010736 I 0.757
Bra011576 Brassica rapa Bra011576 I 0.670
Bra012337 Brassica rapa Bra012337 I 0.698
Bra013055 Brassica rapa Bra013055 I 0.746
Bra017685 Brassica rapa Bra017685 I 0.667
Bra024526 Brassica rapa Bra024526 I 0.679
Bra033572 Brassica rapa Bra033572 I 0.757
BRADI2G24400 Brachypodium distachyon BRADI2G24400 I 0.785
BRADI2G56520 Brachypodium distachyon BRADI2G56520 I 0.762
BRADI4G23967 Brachypodium distachyon BRADI4G23967 I 0.751
BRADI4G36460 Brachypodium distachyon BRADI4G36460 I 0.748
Cagra.0114s0040 Capsella grandiflora Cagra.0114s0040 I 0.698
Cagra.1383s0046 Capsella grandiflora Cagra.1383s0046 I 0.744
Cagra.1533s0005 Capsella grandiflora Cagra.1533s0005 I 0.722
Cagra.2350s0045 Capsella grandiflora Cagra.2350s0045 I 0.692
Carubv10001860m.g Capsella rubella Carubv10001860m.g I 0.741
Carubv10005426m.g Capsella rubella Carubv10005426m.g I 0.744
Carubv10005438m.g Capsella rubella Carubv10005438m.g I 0.692
Carubv10009761m.g Capsella rubella Carubv10009761m.g I 0.698
Carubv10014371m.g Capsella rubella Carubv10014371m.g I 0.722
cassava16245.m1 Manihot esculenta cassava16245.m1 I 0.735
cassava1644.valid.m1 Manihot esculenta cassava1644.valid.m1 I 0.723
cassava29150.valid.m1 Manihot esculenta cassava29150.valid.m1 I 0.748
cassava30431.valid.m1 Manihot esculenta cassava30431.valid.m1 I 0.748
cassava35464.valid.m1 Manihot esculenta cassava35464.valid.m1 I 0.735
cassava4975.m1 Manihot esculenta cassava4975.m1 I 0.723
cassava6228.valid.m1 Manihot esculenta cassava6228.valid.m1 I 0.661
Ca_11026 Cicer arietinum Ca_11026 I 0.748
Ca_16913 Cicer arietinum Ca_16913 I 0.714
Ciclev10002068m.g Citrus clementina Ciclev10002068m.g I 0.765
Ciclev10026112m.g Citrus clementina Ciclev10026112m.g I 0.702
Ciclev10028908m.g Citrus clementina Ciclev10028908m.g I 0.765
Cla007967 Citrullus lanatus Cla007967 I 0.664
Cla012721 Citrullus lanatus Cla012721 I 0.718
Cla016084 Citrullus lanatus Cla016084 I 0.731
Cla017646 Citrullus lanatus Cla017646 I 0.662
Cla020592 Citrullus lanatus Cla020592 I 0.757
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.718
Cucsa.234310 Cucumis sativus Cucsa.234310 I 0.757
Cucsa.370600 Cucumis sativus Cucsa.370600 I 0.731
Eucgr.B00865 Eucalyptus grandis Eucgr.B00865 I 0.663
Eucgr.B02896 Eucalyptus grandis Eucgr.B02896 I 0.667
Eucgr.F02583 Eucalyptus grandis Eucgr.F02583 I 0.709
Eucgr.G01774 Eucalyptus grandis Eucgr.G01774 I 0.724
Eucgr.I00012 Eucalyptus grandis Eucgr.I00012 I 0.740
Eucgr.I01406 Eucalyptus grandis Eucgr.I01406 I 0.757
evm.TU.supercontig_37.149 Carica papaya evm.TU.supercontig_37.149 I 0.748
evm.TU.supercontig_6.280 Carica papaya evm.TU.supercontig_6.280 I 0.695
F775_11247 Aegilops tauschii F775_11247 I 0.681
F775_17298 Aegilops tauschii F775_17298 I 0.783
F775_31191 Aegilops tauschii F775_31191 I 0.765
ATMYB3 Arabidopsis lyrata fgenesh2_kg.1__2457__AT1G22640.1 I 0.698
HOS10 Arabidopsis lyrata fgenesh2_kg.1__3635__AT1G35515.1 I 0.672
AtMYB6 Arabidopsis lyrata fgenesh2_kg.6__2929__AT4G09460.1 I 0.720
ATMYB4 Arabidopsis lyrata fgenesh2_kg.7__59__AT4G38620.1 I 0.757
gene07646-v1.0-hybrid Fragaria vesca gene07646-v1.0-hybrid I 0.748
gene25685-v1.0-hybrid Fragaria vesca gene25685-v1.0-hybrid I 0.709
GLYMA04G00550 Glycine max GLYMA04G00550 I 0.739
GLYMA04G38240 Glycine max GLYMA04G38240 I 0.723
GLYMA06G00630 Glycine max GLYMA06G00630 I 0.739
GLYMA06G16820 Glycine max GLYMA06G16820 I 0.723
GLYMA11G11450 Glycine max GLYMA11G11450 I 0.748
GLYMA12G03600 Glycine max GLYMA12G03600 I 0.748
Gorai.002G196700 Gossypium raimondii Gorai.002G196700 I 0.748
Gorai.005G162600 Gossypium raimondii Gorai.005G162600 I 0.672
Gorai.005G254000 Gossypium raimondii Gorai.005G254000 I 0.744
Gorai.007G179300 Gossypium raimondii Gorai.007G179300 I 0.661
Gorai.007G192900 Gossypium raimondii Gorai.007G192900 I 0.741
Gorai.008G035700 Gossypium raimondii Gorai.008G035700 I 0.748
Gorai.009G263200 Gossypium raimondii Gorai.009G263200 I 0.681
Gorai.009G288900 Gossypium raimondii Gorai.009G288900 I 0.714
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.718
GRMZM2G000818 Zea mays GRMZM2G000818 I 0.745
GRMZM2G041415 Zea mays GRMZM2G041415 I 0.771
GRMZM2G050305 Zea mays GRMZM2G050305 I 0.736
GRMZM2G077789 Zea mays GRMZM2G077789 I 0.787
GRMZM2G084583 Zea mays GRMZM2G084583 I 0.733
GRMZM2G089244 Zea mays GRMZM2G089244 I 0.721
GRMZM2G124715 Zea mays GRMZM2G124715 I 0.727
GRMZM2G160838 Zea mays GRMZM2G160838 I 0.718
GRMZM2G405094 Zea mays GRMZM2G405094 I 0.807
GRMZM2G419239 Zea mays GRMZM2G419239 I 0.718
GRMZM2G431156 Zea mays GRMZM2G431156 I 0.763
GSMUA_Achr10G04590_001 Musa acuminata GSMUA_Achr10G04590_001 I 0.744
GSMUA_Achr10G16010_001 Musa acuminata GSMUA_Achr10G16010_001 I 0.724
GSMUA_Achr11G07180_001 Musa acuminata GSMUA_Achr11G07180_001 I 0.672
GSMUA_Achr1G02420_001 Musa acuminata GSMUA_Achr1G02420_001 I 0.742
GSMUA_Achr1G07550_001 Musa acuminata GSMUA_Achr1G07550_001 I 0.732
GSMUA_Achr1G26520_001 Musa acuminata GSMUA_Achr1G26520_001 I 0.719
GSMUA_Achr2G20600_001 Musa acuminata GSMUA_Achr2G20600_001 I 0.733
GSMUA_Achr3G22200_001 Musa acuminata GSMUA_Achr3G22200_001 I 0.748
GSMUA_Achr5G01180_001 Musa acuminata GSMUA_Achr5G01180_001 I 0.688
GSMUA_Achr5G26000_001 Musa acuminata GSMUA_Achr5G26000_001 I 0.712
GSMUA_Achr6G07260_001 Musa acuminata GSMUA_Achr6G07260_001 I 0.724
GSMUA_Achr6G12930_001 Musa acuminata GSMUA_Achr6G12930_001 I 0.733
GSMUA_Achr6G25420_001 Musa acuminata GSMUA_Achr6G25420_001 I 0.710
GSMUA_Achr8G32480_001 Musa acuminata GSMUA_Achr8G32480_001 I 0.718
GSMUA_Achr8G33900_001 Musa acuminata GSMUA_Achr8G33900_001 I 0.747
GSMUA_Achr9G08600_001 Musa acuminata GSMUA_Achr9G08600_001 I 0.724
GSMUA_Achr9G24180_001 Musa acuminata GSMUA_Achr9G24180_001 I 0.748
GSMUA_AchrUn_randomG28780_001 Musa acuminata GSMUA_AchrUn_randomG28780_001 I 0.736
LjSGA_007368.1 Lotus japonicus LjSGA_007368.1 I 0.726
LjT15F17.90.nd Lotus japonicus LjT15F17.90.nd I 0.773
LPERR11G04310 Leersia perrieri LPERR11G04310 I 0.748
Lus10000411.g Linum usitatissimum Lus10000411.g I 0.747
Lus10001548.g Linum usitatissimum Lus10001548.g I 0.706
Lus10009448.g Linum usitatissimum Lus10009448.g I 0.697
Lus10014129.g Linum usitatissimum Lus10014129.g I 0.738
Lus10016948.g Linum usitatissimum Lus10016948.g I 0.717
Lus10028435.g Linum usitatissimum Lus10028435.g I 0.697
Lus10041888.g Linum usitatissimum Lus10041888.g I 0.697
MDP0000135594 Malus domestica MDP0000135594 I 0.714
MDP0000159011 Malus domestica MDP0000159011 I 0.670
MDP0000175918 Malus domestica MDP0000175918 I 0.697
MDP0000249611 Malus domestica MDP0000249611 I 0.748
mgf003913m Mimulus guttatus mgf003913m I 0.726
mgf005459m Mimulus guttatus mgf005459m I 0.719
mgf012705m Mimulus guttatus mgf012705m I 0.739
mgf018105m Mimulus guttatus mgf018105m I 0.710
MLOC_63914 Hordeum vulgare MLOC_63914 I 0.744
MLOC_65957 Hordeum vulgare MLOC_65957 I 0.751
MLOC_69570 Hordeum vulgare MLOC_69570 I 0.783
MLOC_71041 Hordeum vulgare MLOC_71041 I 0.785
MTR_3g097450 Medicago truncatula MTR_3g097450 I 0.714
MTR_4g073420 Medicago truncatula MTR_4g073420 I 0.748
MTR_8g095390 Medicago truncatula MTR_8g095390 I 0.717
OB01G47670 Oryza brachyantha OB01G47670 I 0.783
OB08G29560 Oryza brachyantha OB08G29560 I 0.747
OB09G24400 Oryza brachyantha OB09G24400 I 0.748
OB11G14080 Oryza brachyantha OB11G14080 I 0.748
OB12G14430 Oryza brachyantha OB12G14430 I 0.714
OBART11G04950 Oryza barthii OBART11G04950 I 0.748
OGLUM05G18510 Oryza glumaepatula OGLUM05G18510 I 0.738
OGLUM11G04790 Oryza glumaepatula OGLUM11G04790 I 0.748
OGLUM12G05340 Oryza glumaepatula OGLUM12G05340 I 0.714
ONIVA11G05280 Oryza nivara ONIVA11G05280 I 0.748
ONIVA12G04230 Oryza nivara ONIVA12G04230 I 0.714
OPUNC11G04750 Oryza punctata OPUNC11G04750 I 0.748
OPUNC12G04520 Oryza punctata OPUNC12G04520 I 0.714
orange1.1g021220m.g Citrus sinensis orange1.1g021220m.g I 0.702
orange1.1g021503m.g Citrus sinensis orange1.1g021503m.g I 0.765
orange1.1g023056m.g Citrus sinensis orange1.1g023056m.g I 0.765
ORGLA01G0328800 Oryza glaberrima ORGLA01G0328800 I 0.783
ORGLA08G0216900 Oryza glaberrima ORGLA08G0216900 I 0.747
ORGLA09G0141200 Oryza glaberrima ORGLA09G0141200 I 0.748
ORGLA11G0047500 Oryza glaberrima ORGLA11G0047500 I 0.748
ORUFI05G18670 Oryza rufipogon ORUFI05G18670 I 0.785
ORUFI08G25300 Oryza rufipogon ORUFI08G25300 I 0.747
ORUFI09G19350 Oryza rufipogon ORUFI09G19350 I 0.748
ORUFI11G04860 Oryza rufipogon ORUFI11G04860 I 0.748
ORUFI12G05190 Oryza rufipogon ORUFI12G05190 I 0.714
OS01G0874300 Oryza sativa OS01G0874300 I 0.783
OS05G0429900 Oryza sativa OS05G0429900 I 0.785
OS09G0538400 Oryza sativa OS09G0538400 I 0.748
OS11G0180900 Oryza sativa OS11G0180900 I 0.748
Pavir.Ba01213 Panicum virgatum Pavir.Ba01213 I 0.751
Pavir.Bb02469 Panicum virgatum Pavir.Bb02469 I 0.751
Pavir.Ca00231 Panicum virgatum Pavir.Ca00231 I 0.714
Pavir.Ca00232 Panicum virgatum Pavir.Ca00232 I 0.762
Pavir.Ea03682 Panicum virgatum Pavir.Ea03682 I 0.783
Pavir.Ha00871 Panicum virgatum Pavir.Ha00871 I 0.727
Pavir.Hb01732 Panicum virgatum Pavir.Hb01732 I 0.730
Pavir.J00442 Panicum virgatum Pavir.J00442 I 0.694
Pavir.J00444 Panicum virgatum Pavir.J00444 I 0.684
Pavir.J01502 Panicum virgatum Pavir.J01502 I 0.783
Pavir.J11802 Panicum virgatum Pavir.J11802 I 0.735
Pavir.J16675 Panicum virgatum Pavir.J16675 I 0.735
Pavir.J30990 Panicum virgatum Pavir.J30990 I 0.852
PGSC0003DMG400006176 Solanum tuberosum PGSC0003DMG400006176 I 0.727
PGSC0003DMG400013215 Solanum tuberosum PGSC0003DMG400013215 I 0.727
PGSC0003DMG400030548 Solanum tuberosum PGSC0003DMG400030548 I 0.678
PGSC0003DMG400031317 Solanum tuberosum PGSC0003DMG400031317 I 0.742
PK05970.1 Cannabis sativa PK05970.1 I 0.661
PK21058.1 Cannabis sativa PK21058.1 I 0.714
PK29029.1 Cannabis sativa PK29029.1 I 0.748
Pm004199 Prunus mume Pm004199 I 0.718
Pm014372 Prunus mume Pm014372 I 0.691
Pm020852 Prunus mume Pm020852 I 0.748
POPTR_0004s14510 Populus trichocarpa POPTR_0004s14510 I 0.773
POPTR_0004s18020 Populus trichocarpa POPTR_0004s18020 I 0.718
POPTR_0005s11410 Populus trichocarpa POPTR_0005s11410 I 0.725
POPTR_0009s13640 Populus trichocarpa POPTR_0009s13640 I 0.751
POPTR_0010s12420 Populus trichocarpa POPTR_0010s12420 I 0.663
POPTR_0013s11360 Populus trichocarpa POPTR_0013s11360 I 0.735
POPTR_0019s00750 Populus trichocarpa POPTR_0019s00750 I 0.740
POPTR_0019s11090 Populus trichocarpa POPTR_0019s11090 I 0.718
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.718
PRUPE_ppa010277mg Prunus persica PRUPE_ppa010277mg I 0.748
PRUPE_ppa010716mg Prunus persica PRUPE_ppa010716mg I 0.691
SapurV1A.0130s0360 Salix purpurea SapurV1A.0130s0360 I 0.713
SapurV1A.0277s0120 Salix purpurea SapurV1A.0277s0120 I 0.759
SapurV1A.0391s0300 Salix purpurea SapurV1A.0391s0300 I 0.691
SapurV1A.0591s0010 Salix purpurea SapurV1A.0591s0010 I 0.764
SapurV1A.0923s0040 Salix purpurea SapurV1A.0923s0040 I 0.751
SapurV1A.1127s0040 Salix purpurea SapurV1A.1127s0040 I 0.764
SapurV1A.1985s0010 Salix purpurea SapurV1A.1985s0010 I 0.759
SapurV1A.2094s0030 Salix purpurea SapurV1A.2094s0030 I 0.714
Sb02g031190 Sorghum bicolor Sb02g031190 I 0.751
Sb03g041360 Sorghum bicolor Sb03g041360 I 0.783
Sb07g024890 Sorghum bicolor Sb07g024890 I 0.732
Sb08g004720 Sorghum bicolor Sb08g004720 I 0.781
MYB7 Arabidopsis lyrata scaffold_303957.1 I 0.719
AtMYB32 Arabidopsis lyrata scaffold_700628.1 I 0.662
Si011098m.g Setaria italica Si011098m.g I 0.772
Si012017m.g Setaria italica Si012017m.g I 0.772
Si012585m.g Setaria italica Si012585m.g I 0.772
Si015081m.g Setaria italica Si015081m.g I 0.735
Si026734m.g Setaria italica Si026734m.g I 0.723
Si030943m.g Setaria italica Si030943m.g I 0.751
Solyc01g111500.2 Solanum lycopersicum Solyc01g111500.2 I 0.727
Solyc05g008250.1 Solanum lycopersicum Solyc05g008250.1 I 0.678
Solyc06g065100.2 Solanum lycopersicum Solyc06g065100.2 I 0.742
Solyc10g055410.1 Solanum lycopersicum Solyc10g055410.1 I 0.757
TCM_000174 Theobroma cacao TCM_000174 I 0.725
TCM_006638 Theobroma cacao TCM_006638 I 0.748
TCM_010839 Theobroma cacao TCM_010839 I 0.672
TCM_012631 Theobroma cacao TCM_012631 I 0.672
TCM_019261 Theobroma cacao TCM_019261 I 0.661
TCM_036404 Theobroma cacao TCM_036404 I 0.718
Thhalv10008456m.g Eutrema salsugineum Thhalv10008456m.g I 0.698
Thhalv10022799m.g Eutrema salsugineum Thhalv10022799m.g I 0.722
Thhalv10025886m.g Eutrema salsugineum Thhalv10025886m.g I 0.757
Thhalv10025926m.g Eutrema salsugineum Thhalv10025926m.g I 0.667
Thhalv10028861m.g Eutrema salsugineum Thhalv10028861m.g I 0.745
TRAES3BF044400110CFD_g Triticum aestivum TRAES3BF044400110CFD_g I 0.783
Traes_4AL_CC5803BED Triticum aestivum Traes_4AL_CC5803BED I 0.748
Traes_4BS_6253482BD Triticum aestivum Traes_4BS_6253482BD I 0.748
Traes_4DS_7BFAC49C2 Triticum aestivum Traes_4DS_7BFAC49C2 I 0.748
Traes_5AL_56F30392D Triticum aestivum Traes_5AL_56F30392D I 0.765
Traes_5AS_62CC650D3 Triticum aestivum Traes_5AS_62CC650D3 I 0.714
Traes_5BL_87924B626 Triticum aestivum Traes_5BL_87924B626 I 0.744
Traes_5BL_AED68C680 Triticum aestivum Traes_5BL_AED68C680 I 0.765
Traes_5BS_B41FDD6AA Triticum aestivum Traes_5BS_B41FDD6AA I 0.744
Traes_5DL_1868E2A6C Triticum aestivum Traes_5DL_1868E2A6C I 0.765
Traes_5DL_8ABCB84A7 Triticum aestivum Traes_5DL_8ABCB84A7 I 0.744
TRIUR3_11890 Triticum urartu TRIUR3_11890 I 0.765
TRIUR3_22555 Triticum urartu TRIUR3_22555 I 0.783
TRIUR3_23036 Triticum urartu TRIUR3_23036 N 0.668
VIT_01s0011g04760 Vitis vinifera VIT_01s0011g04760 I 0.663
VIT_03s0038g02310 Vitis vinifera VIT_03s0038g02310 I 0.748
VIT_04s0023g03710 Vitis vinifera VIT_04s0023g03710 I 0.744
VIT_05s0077g01360 Vitis vinifera VIT_05s0077g01360 I 0.671
MYB7 Vitis vinifera VIT_07s0130g00040 I 0.735
VIT_14s0006g01620 Vitis vinifera VIT_14s0006g01620 I 0.685