Pavir.J34894 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J34894 T289459_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.891 0.978
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.881 0.913
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.881 0.913
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.845 0.870
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.845 0.870
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.795 0.870
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.795 0.870
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.795 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.790 0.783
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.790 0.783
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.790 0.783
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.790 0.783
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.790 0.783
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.775 0.826
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J34894.1.p Myb 24 69

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

301 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AALB001858 Anopheles albimanus AALB001858 N
ACOM030335 Anopheles coluzzii ACOM030335 N
ACUA024844 Anopheles culicifacies ACUA024844 N
AEPI005595 Anopheles epiroticus AEPI005595 N
AFAF010288 Anopheles farauti AFAF010288 N
AFUN010912 Anopheles funestus AFUN010912 N
AMAM004030 Anopheles maculatus AMAM004030 N
AMAM020217 Anopheles maculatus AMAM020217 N
AMEC009773 Anopheles melas AMEC009773 N
AMEC022025 Anopheles melas AMEC022025 N
AMEM000800 Anopheles merus AMEM000800 N
AMIN006061 Anopheles minimus AMIN006061 N
AQUA010548 Anopheles quadriannulatus AQUA010548 N
ASTEI03049 Anopheles stephensi ASTEI03049 N
BGIBMGA008808 Bombyx mori BGIBMGA008808 N
CLEC006353 Cimex lectularius CLEC006353 N
CLEC007980 Cimex lectularius CLEC007980 N
Cmyd_10010227 Chelonia mydas Cmyd_10010227 N
CPIJ017142 Culex quinquefasciatus CPIJ017142 N
CpipJ_CPIJ017142 Culex pipiens CpipJ_CPIJ017142 N
D915_05220 Fasciola hepatica D915_05220 N
DAPPUDRAFT_119144 Daphnia pulex DAPPUDRAFT_119144 N
DAPPUDRAFT_250798 Daphnia pulex DAPPUDRAFT_250798 N
DILT_0000261401 Diphyllobothrium latum DILT_0000261401 N
ENSAMEG00000002708 Ailuropoda melanoleuca ENSAMEG00000002708 N
ENSAPLG00000000834 Anas platyrhynchos ENSAPLG00000000834 N
OSR1 Canis familiaris ENSCAFG00000003775 I
ENSDNOG00000012011 Dasypus novemcinctus ENSDNOG00000012011 N
OSR2 Homo sapiens ENSG00000164920 D
OSR1 Gorilla gorilla ENSGGOG00000016877 I
ENSOARG00000016880 Ovis aries ENSOARG00000016880 I
OSR1 Ochotona princeps ENSOPRG00000009463 N
HMEL007222 Heliconius melpomene HMEL007222 N
Hsal_05245--XP_393879.3_APIME Harpegnathos saltator Hsal_05245--XP_393879.3_APIME N
Hsal_05247--XP_393879.3_APIME Harpegnathos saltator Hsal_05247--XP_393879.3_APIME N
Hsal_05248--XP_393879.3_APIME Harpegnathos saltator Hsal_05248--XP_393879.3_APIME N
KGM_21211 Danaus plexippus KGM_21211 N
L892_g14369 Steinernema scapterisci L892_g14369 N
LDEC020116 Leptinotarsa decemlineata LDEC020116 N
LDEC020260 Leptinotarsa decemlineata LDEC020260 N
MESCA005459 Megaselia scalaris MESCA005459 N
PPAI007180 Phlebotomus papatasi PPAI007180 N
PPAI007184 Phlebotomus papatasi PPAI007184 N
RPRC010841 Rhodnius prolixus RPRC010841 N
SMAR005253 Strigamia maritima SMAR005253 N
SMU15031758 Schmidtea mediterranea SMU15031758 N
SNAPOd2T00004484001 Oikopleura dioica SNAPOd2T00004484001 N
SPER_0001547901 Spirometra erinaceieuropaei SPER_0001547901 N
SPER_0001845401 Spirometra erinaceieuropaei SPER_0001845401 N
SPER_0002767601 Spirometra erinaceieuropaei SPER_0002767601 N
TCLT_0000345101 Thelazia callipaeda TCLT_0000345101 N
TCNE_0001446701 Toxocara canis TCNE_0001446701 N
TRE_0001100701 Trichobilharzia regenti TRE_0001100701 N
WUBG_17847 Wuchereria bancrofti WUBG_17847 N
YQE_05715 Dendroctonus ponderosae YQE_05715 N