CBN14643 (Caenorhabditis brenneri)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBN14643 T301765_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hnf4
M03935_2.00 		Drosophila melanogaster
RGGKCAAAGGTCA
TGACCTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_1 		0.960 0.686
Hnf4
M03936_2.00 		Drosophila melanogaster
RGGKCAAAGTYCA
TGRACTTTGMCCY		 SELEX
Nitta et al.(2015)
Hnf4_2 		0.960 0.686
Hnf4
M03937_2.00 		Drosophila melanogaster
RGTVCAAAGKTCR
YGAMCTTTGBACY		 SELEX
Nitta et al.(2015)
Hnf4_3 		0.960 0.686
Hnf4
M03938_2.00 		Drosophila melanogaster
RTGRACTTTGGACY
RGTCCAAAGTYCAY		 SELEX
Nitta et al.(2015)
Hnf4_4 		0.960 0.686
Hnf4
M06428_2.00 		Drosophila melanogaster
DKNKWSSNGGGGTCA
TGACCCCNSSWMNMH		 B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914 		0.960 0.686
Hnf4
M06429_2.00 		Drosophila melanogaster
GGGGTCAH
DTGACCCC		 B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914 		0.960 0.686
Hnf4a
M00182_2.00 		Mus musculus
NNRGKYMRNN
NNYKRMCYNN		 PBM
Badis et al.(2009)
Hnf4a_2640 		0.958 0.657
HNF4A
M03357_2.00 		Homo sapiens
RWTGRACTTTGSACYB
VRGTSCAAAGTYCAWY		 SELEX
Jolma et al.(2013)
HNF4A_1 		0.958 0.657
HNF4A
M03358_2.00 		Homo sapiens
RRGGKCAAAGTCCRBN
NVYGGACTTTGMCCYY		 SELEX
Jolma et al.(2013)
HNF4A_2 		0.958 0.657
HNF4A
M03359_2.00 		Homo sapiens
NDTGGACTTTGDACYB
VRGTHCAAAGTCCAHN		 SELEX
Jolma et al.(2013)
HNF4A_3 		0.958 0.657
HNF4A
M03360_2.00 		Homo sapiens
RRGGTCAAAGKTCA
TGAMCTTTGACCYY		 SELEX
Jolma et al.(2013)
HNF4A_4 		0.958 0.657
HNF4A
M03361_2.00 		Homo sapiens
VRGGTCAAAGTCCANN
NNTGGACTTTGACCYB		 SELEX
Jolma et al.(2013)
HNF4A_5 		0.958 0.657
HNF4A
M03362_2.00 		Homo sapiens
RRGTYCAAAGKTCAH
DTGAMCTTTGRACYY		 SELEX
Jolma et al.(2013)
HNF4A_6 		0.958 0.657
Hnf4a
M03426_2.00 		Mus musculus
RRGGTCAAAGTCCANN
NNTGGACTTTGACCYY		 SELEX
Jolma et al.(2013)
Hnf4a_1 		0.958 0.657
HNF4A
M05573_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_1 		0.958 0.657
HNF4A
M05574_2.00 		Homo sapiens
RRGGTCAAAGTCCAH
DTGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_2 		0.958 0.657
HNF4A
M05575_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_3 		0.958 0.657
HNF4A
M05576_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_HT-SELEX_4 		0.958 0.657
HNF4A
M08219_2.00 		Homo sapiens
VRGDBCAAAGKYCAN
NTGRMCTTTGVHCYB		 ChIP-seq
Contrino et al.(2012)
Mv81 		0.958 0.657
HNF4A
M08220_2.00 		Homo sapiens
AGTCCA
TGGACT		 ChIP-seq
Contrino et al.(2012)
Mv82 		0.958 0.657
HNF4A
M09268_2.00 		Homo sapiens
VRGKNCAAAGTYCA
TGRACTTTGNMCYB		 Misc
Kulakovskiy et al.(2013)
HNF4A_HUMAN.H11MO.0.A 		0.958 0.657
Hnf4a
M09308_2.00 		Mus musculus
NRGKBCAAAGTYCA
TGRACTTTGVMCYN		 Misc
Kulakovskiy et al.(2013)
HNF4A_MOUSE.H11MO.0.A 		0.958 0.657
HNF4A
M09605_2.00 		Homo sapiens
NNVRGDNCAAAGKYCA
TGRMCTTTGNHCYBNN		 Misc
Heinz et al.(2010)
HepG2-HNF4a_GSE25021 		0.958 0.657
HNF4A
M11105_2.00 		Homo sapiens
VRGGNCAAAGKYCRB
VYGRMCTTTGNCCYB		 Transfac
Matys et al.(2006)
V$HNF4_01_B 		0.958 0.657
HNF4A
M11106_2.00 		Homo sapiens
NNNRGDBYAAAGKBCANND
HNNTGVMCTTTRVHCYNNN		 Transfac
Matys et al.(2006)
V$HNF4_01 		0.958 0.657
HNF4A
M11107_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_09 		0.958 0.657
HNF4A
M11108_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_10 		0.958 0.657
HNF4A
M11109_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4ALPHA_Q6 		0.958 0.657
HNF4A
M11110_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q3 		0.958 0.657
HNF4A
M11111_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4A_Q6_01 		0.958 0.657
HNF4A
M11112_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_01 		0.958 0.657
HNF4A
M11113_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_02 		0.958 0.657
HNF4A
M11114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_03 		0.958 0.657
HNF4A
M11115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4_Q6_04 		0.958 0.657
HNF4A
M05577_2.00 		Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_1 		0.958 0.657
HNF4A
M05578_2.00 		Homo sapiens
RRGGTCAAAGTCCRN
NYGGACTTTGACCYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_2 		0.958 0.657
HNF4A
M05579_2.00 		Homo sapiens
RRGTCCAAAGGTCRN
NYGACCTTTGGACYY		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_3 		0.958 0.657
HNF4A
M05580_2.00 		Homo sapiens
DTGGACTTTGGACYY
RRGTCCAAAGTCCAH		 SELEX
Yin et al.(2017)
HNF4A_eDBD_Methyl-HT-SELEX_4 		0.958 0.657
HNF4G
M08155_2.00 		Homo sapiens
NVRGDNCAAAGKYCA
TGRMCTTTGNHCYBN		 ChIP-seq
Mathelier et al.(2014)
MA0484.1 		0.957 0.671
HNF4G
M09287_2.00 		Homo sapiens
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B 		0.957 0.671
Hnf4g
M09307_2.00 		Mus musculus
VRGDNCAAAGKYCA
TGRMCTTTGNHCYB		 Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C 		0.957 0.671
HNF4G
M11155_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_01 		0.957 0.671
HNF4G
M11156_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF4G_02 		0.957 0.671
nhr-49
M02413_2.00 		Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN		 PBM
Weirauch et al.(2014)
pTH5891 		0.807 0.543
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN14643 Nuclear receptor 4 73

Links

Other Nuclear receptor family TFs
Other Caenorhabditis brenneri TFs

352 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_079180 Acremonium chrysogenum ACRE_079180 I
BBA_04449 Beauveria bassiana BBA_04449 I
Bcin07g02960 Botrytis cinerea Bcin07g02960 I
BOTBODRAFT_92498 Botryobasidium botryosum BOTBODRAFT_92498 I
CCM_07005 Cordyceps militaris CCM_07005 I
CFIO01_10932 Colletotrichum fioriniae CFIO01_10932 I
CGGC5_4872 Colletotrichum gloeosporioides CGGC5_4872 I
CH063_09324 Colletotrichum higginsianum CH063_09324 I
CHGG_05891 Chaetomium globosum CHGG_05891 I
CMQ_8013 Grosmannia clavigera CMQ_8013 I
Cob_08105 Colletotrichum orbiculare Cob_08105 I
CPUR_03253 Claviceps purpurea CPUR_03253 I
CSUB01_03838 Colletotrichum sublineola CSUB01_03838 I
CTHT_0009000 Chaetomium thermophilum CTHT_0009000 I
estExt_fgenesh1_pm.C_140003 Cryphonectria parasitica estExt_fgenesh1_pm.C_140003 I
F503_01009 Ophiostoma piceae uamh F503_01009 I
FFUJ_01365 Fusarium fujikuroi FFUJ_01365 I
FGRRES_15831 Fusarium graminearum FGRRES_15831 I
FOXG_00218 Fusarium oxysporum FOXG_00218 I
FPSE_02604 Fusarium pseudograminearum FPSE_02604 I
FVEG_01300 Fusarium verticillioides FVEG_01300 I
GGTG_04163 Gaeumannomyces graminis GGTG_04163 I
GLRG_04053 Colletotrichum graminicola GLRG_04053 I
HMPREF1624_03694 Sporothrix schenckii HMPREF1624_03694 I
MAC_04202 Metarhizium acridum MAC_04202 I
MAJ_02156 Metarhizium majus MAJ_02156 I
MAM_07644 Metarhizium album MAM_07644 I
MANI_024675 Metarhizium anisopliae MANI_024675 I
MAPG_00558 Magnaporthe poae MAPG_00558 I
MBR_03633 Metarhizium brunneum MBR_03633 I
MGG_10837 Magnaporthe oryzae MGG_10837 I
MGU_04823 Metarhizium guizhouense MGU_04823 I
MYCTH_2296905 Myceliophthora thermophila MYCTH_2296905 I
NCU02957 Neurospora crassa NCU02957 D
NEUTE1DRAFT_150703 Neurospora tetrasperma NEUTE1DRAFT_150703 I
OIDMADRAFT_110480 Oidiodendron maius OIDMADRAFT_110480 I
OIDMADRAFT_57256 Oidiodendron maius OIDMADRAFT_57256 I
PFICI_01786 Pestalotiopsis fici PFICI_01786 I
PODANS_1_18420 Podospora anserina PODANS_1_18420 I
S40285_00887 Stachybotrys chlorohalonata S40285_00887 I
S40288_08146 Stachybotrys chartarum S40288_08146 I
SAPIO_CDS5040 Scedosporium apiospermum SAPIO_CDS5040 I
SBOR_5241 Sclerotinia borealis SBOR_5241 I
SMAC_00493 Sordaria macrospora SMAC_00493 I
SPBR_01576 Sporothrix brasiliensis SPBR_01576 I
SS1G_01995 Sclerotinia sclerotiorum SS1G_01995 I
THITE_2112332 Thielavia terrestris THITE_2112332 I
TRIATDRAFT_299973 Trichoderma atroviride TRIATDRAFT_299973 I
TRIREDRAFT_122371 Trichoderma reesei TRIREDRAFT_122371 I
TRIVIDRAFT_35604 Trichoderma virens TRIVIDRAFT_35604 I
UV8b_5697 Ustilaginoidea virens UV8b_5697 I
VDAG_03292 Verticillium dahliae VDAG_03292 I
VDBG_06134 Verticillium alfalfae VDBG_06134 I
VDBG_06134 Verticillium albo atrum VDBG_06134 I
VHEMI06417 Torrubiella hemipterigena VHEMI06417 I
X797_003690 Metarhizium robertsii X797_003690 I