csin104466 (Clonorchis sinensis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 csin104466 T308379_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nr2f6
M00811_2.00 		Mus musculus
NRRGGTCANN
NNTGACCYYN		 PBM
Weirauch et al.(2013)
pTH2193 		0.771 0.529
Nr2f6
M03419_2.00 		Mus musculus
RAGGTCAADAGGTCA
TGACCTHTTGACCTY		 SELEX
Jolma et al.(2013)
Nr2f6_1 		0.771 0.529
Nr2f6
M03420_2.00 		Mus musculus
RRGGTCAAAGGTCA
TGACCTTTGACCYY		 SELEX
Jolma et al.(2013)
Nr2f6_2 		0.771 0.529
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
csin104466 Nuclear receptor 56 127

Links

Other Nuclear receptor family TFs
Other Clonorchis sinensis TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_022_00282 Aquilegia coerulea Aquca_022_00282 I
BGIOSGA018023 Oryza indica BGIOSGA018023 N
BRADI2G24790 Brachypodium distachyon BRADI2G24790 N
cassava2513.valid.m1 Manihot esculenta cassava2513.valid.m1 I
cassava2514.valid.m1 Manihot esculenta cassava2514.valid.m1 I
cassava2515.valid.m1 Manihot esculenta cassava2515.valid.m1 I
cassava43226.valid.m1 Manihot esculenta cassava43226.valid.m1 N
cassava43227.valid.m1 Manihot esculenta cassava43227.valid.m1 N
F775_32837 Aegilops tauschii F775_32837 N
GRMZM2G104400 Zea mays GRMZM2G104400 N
GRMZM2G456568 Zea mays GRMZM2G456568 N
GSMUA_Achr10G04530_001 Musa acuminata GSMUA_Achr10G04530_001 N
LPERR05G13650 Leersia perrieri LPERR05G13650 N
mgf025137m Mimulus guttatus mgf025137m N
OB05G25040 Oryza brachyantha OB05G25040 N
OBART05G17230 Oryza barthii OBART05G17230 N
OGLUM05G18240 Oryza glumaepatula OGLUM05G18240 N
OMERI05G14890 Oryza meridionalis OMERI05G14890 N
ONIVA05G17930 Oryza nivara ONIVA05G17930 N
OPUNC05G15090 Oryza punctata OPUNC05G15090 N
ORGLA05G0148600 Oryza glaberrima ORGLA05G0148600 N
ORUFI05G18410 Oryza rufipogon ORUFI05G18410 N
OS05G0426200 Oryza sativa OS05G0426200 N
Pavir.J02083 Panicum virgatum Pavir.J02083 N
Pavir.J07259 Panicum virgatum Pavir.J07259 N
Pavir.J18990 Panicum virgatum Pavir.J18990 N
Sb09g020880 Sorghum bicolor Sb09g020880 N
Si001354m.g Setaria italica Si001354m.g N
Traes_1AL_C4FA8404A Triticum aestivum Traes_1AL_C4FA8404A N
Traes_1DL_F410CF9FD Triticum aestivum Traes_1DL_F410CF9FD N
Traes_5AL_41B98AAEF Triticum aestivum Traes_5AL_41B98AAEF N
TRIUR3_22935 Triticum urartu TRIUR3_22935 N