CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

csin111366 *(Clonorchis sinensis)* Nuclear receptor
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00105 (zf-C4)	IPR001628	csin111366	T308389_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
tll M02408_2.00	Drosophila melanogaster	NRASGTCAANNN	NNNTTGACSTYN	PBM Weirauch et al.(2014) pTH5714	0.987	0.800
tll M03932_2.00	Drosophila melanogaster	NRAGTCAAAAGTCA	TGACTTTTGACTYN	SELEX Nitta et al.(2015) tll_1	0.987	0.800
tll M03933_2.00	Drosophila melanogaster	NRAGTCAADAAGTCA	TGACTTHTTGACTYN	SELEX Nitta et al.(2015) tll_2	0.987	0.800
tll M06558_2.00	Drosophila melanogaster	WAAAGTCAAM	KTTGACTTTW	B1H Mathelier et al.(2014) MA0459.1	0.987	0.800
tll M06424_2.00	Drosophila melanogaster	AAAGTYA	TRACTTT	B1H Zhu et al.(2011) tll_FlyReg_FBgn0003720	0.987	0.800
tll M06425_2.00	Drosophila melanogaster	WAAAGTCAAM	KTTGACTTTW	B1H Zhu et al.(2011) tll_NAR_FBgn0003720	0.987	0.800
tll M09688_2.00	Drosophila melanogaster	MAAAGTCAAH	DTTGACTTTK	Misc Kulakovskiy et al.(2009) tll	0.987	0.800
tll M11190_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$TLL_Q6	0.987	0.800
NR2E1 M02394_2.00	Homo sapiens	NGAGGTCARN	NYTGACCTCN	PBM Weirauch et al.(2014) pTH6281	0.920	0.786
Nr2e1 M00814_2.00	Mus musculus	NNNGTYRNNN	NNNYRACNNN	PBM Weirauch et al.(2013) pTH2936	0.920	0.786
A1YGC6_PANPA M02421_2.00	Pan paniscus	NNGTCANNN	NNNTGACNN	PBM Weirauch et al.(2014) pTH5561	0.920	0.786
NR2E1 M03364_2.00	Homo sapiens	WDAAGTCAA	TTGACTTHW	SELEX Jolma et al.(2013) NR2E1_1	0.920	0.786
NR2E1 M03365_2.00	Homo sapiens	RARTCAWDAAGTCA	TGACTTHWTGAYTY	SELEX Jolma et al.(2013) NR2E1_2	0.920	0.786
Nr2e1 M03427_2.00	Mus musculus	WDAAGTCAW	WTGACTTHW	SELEX Jolma et al.(2013) Nr2e1_1	0.920	0.786
Nr2e1 M03428_2.00	Mus musculus	RRGTCAWDAAGTCA	TGACTTHWTGACYY	SELEX Jolma et al.(2013) Nr2e1_2	0.920	0.786
NR2E1 M05585_2.00	Homo sapiens	NNAAGTCAN	NTGACTTNN	SELEX Yin et al.(2017) NR2E1_FL_HT-SELEX	0.920	0.786
NR2E1 M05586_2.00	Homo sapiens	NDAAGTCAN	NTGACTTHN	SELEX Yin et al.(2017) NR2E1_FL_Methyl-HT-SELEX	0.920	0.786
dsf M06431_2.00	Drosophila melanogaster	AAAAGTCANH	DNTGACTTTT	B1H Zhu et al.(2011) dsf_SANGER_5_FBgn0015381	0.833	0.714
Hnf4a M00182_2.00	Mus musculus	NNRGKYMRNN	NNYKRMCYNN	PBM Badis et al.(2009) Hnf4a_2640	0.746	0.543
HNF4A M03357_2.00	Homo sapiens	RWTGRACTTTGSACYB	VRGTSCAAAGTYCAWY	SELEX Jolma et al.(2013) HNF4A_1	0.746	0.543
HNF4A M03358_2.00	Homo sapiens	RRGGKCAAAGTCCRBN	NVYGGACTTTGMCCYY	SELEX Jolma et al.(2013) HNF4A_2	0.746	0.543
HNF4A M03359_2.00	Homo sapiens	NDTGGACTTTGDACYB	VRGTHCAAAGTCCAHN	SELEX Jolma et al.(2013) HNF4A_3	0.746	0.543
HNF4A M03360_2.00	Homo sapiens	RRGGTCAAAGKTCA	TGAMCTTTGACCYY	SELEX Jolma et al.(2013) HNF4A_4	0.746	0.543
HNF4A M03361_2.00	Homo sapiens	VRGGTCAAAGTCCANN	NNTGGACTTTGACCYB	SELEX Jolma et al.(2013) HNF4A_5	0.746	0.543
HNF4A M03362_2.00	Homo sapiens	RRGTYCAAAGKTCAH	DTGAMCTTTGRACYY	SELEX Jolma et al.(2013) HNF4A_6	0.746	0.543
Hnf4a M03426_2.00	Mus musculus	RRGGTCAAAGTCCANN	NNTGGACTTTGACCYY	SELEX Jolma et al.(2013) Hnf4a_1	0.746	0.543
HNF4A M05573_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_1	0.746	0.543
HNF4A M05574_2.00	Homo sapiens	RRGGTCAAAGTCCAH	DTGGACTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_2	0.746	0.543
HNF4A M05575_2.00	Homo sapiens	RRGTCCAAAGGTCRN	NYGACCTTTGGACYY	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_3	0.746	0.543
HNF4A M05576_2.00	Homo sapiens	DTGGACTTTGGACYY	RRGTCCAAAGTCCAH	SELEX Yin et al.(2017) HNF4A_eDBD_HT-SELEX_4	0.746	0.543
HNF4A M08219_2.00	Homo sapiens	VRGDBCAAAGKYCAN	NTGRMCTTTGVHCYB	ChIP-seq Contrino et al.(2012) Mv81	0.746	0.543
HNF4A M08220_2.00	Homo sapiens	AGTCCA	TGGACT	ChIP-seq Contrino et al.(2012) Mv82	0.746	0.543
HNF4A M09268_2.00	Homo sapiens	VRGKNCAAAGTYCA	TGRACTTTGNMCYB	Misc Kulakovskiy et al.(2013) HNF4A_HUMAN.H11MO.0.A	0.746	0.543
Hnf4a M09308_2.00	Mus musculus	NRGKBCAAAGTYCA	TGRACTTTGVMCYN	Misc Kulakovskiy et al.(2013) HNF4A_MOUSE.H11MO.0.A	0.746	0.543
HNF4A M09605_2.00	Homo sapiens	NNVRGDNCAAAGKYCA	TGRMCTTTGNHCYBNN	Misc Heinz et al.(2010) HepG2-HNF4a_GSE25021	0.746	0.543
HNF4A M11105_2.00	Homo sapiens	VRGGNCAAAGKYCRB	VYGRMCTTTGNCCYB	Transfac Matys et al.(2006) V$HNF4_01_B	0.746	0.543
HNF4A M11106_2.00	Homo sapiens	NNNRGDBYAAAGKBCANND	HNNTGVMCTTTRVHCYNNN	Transfac Matys et al.(2006) V$HNF4_01	0.746	0.543
HNF4A M11107_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_09	0.746	0.543
HNF4A M11108_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_10	0.746	0.543
HNF4A M11109_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4ALPHA_Q6	0.746	0.543
HNF4A M11110_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_Q3	0.746	0.543
HNF4A M11111_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4A_Q6_01	0.746	0.543
HNF4A M11112_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_01	0.746	0.543
HNF4A M11113_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_02	0.746	0.543
HNF4A M11114_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_03	0.746	0.543
HNF4A M11115_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF4_Q6_04	0.746	0.543
HNF4A M05577_2.00	Homo sapiens	RRGGTCAAAGGTCRN	NYGACCTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_1	0.746	0.543
HNF4A M05578_2.00	Homo sapiens	RRGGTCAAAGTCCRN	NYGGACTTTGACCYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_2	0.746	0.543
HNF4A M05579_2.00	Homo sapiens	RRGTCCAAAGGTCRN	NYGACCTTTGGACYY	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_3	0.746	0.543
HNF4A M05580_2.00	Homo sapiens	DTGGACTTTGGACYY	RRGTCCAAAGTCCAH	SELEX Yin et al.(2017) HNF4A_eDBD_Methyl-HT-SELEX_4	0.746	0.543
For this family, TFs with SR scores > 0.745* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
csin111366	Nuclear receptor	21	101	IPCRVCKDHSSGKHYGIYACDGCAGFFKRSIRRNRQYACKNRTANGTKLSTAVGGCRVDKSHRNQCRACRLKKCLEVGMNR

Links
Other Nuclear receptor family TFs
Other *Clonorchis sinensis* TFs

324 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
MAM_00765	Metarhizium album	MAM_00765	N
S40285_09591	Stachybotrys chlorohalonata	S40285_09591	N

csin111366 (Clonorchis sinensis) Nuclear receptor

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

324 Related TFs

csin111366 **(Clonorchis sinensis)
Nuclear receptor**