D918_01741 (Trichuris suis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 D918_01741 T308432_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
THRB
M03379_2.00 		Homo sapiens
DTGACCTBATVAGGTCAN
NTGACCTBATVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_1 		0.947 0.800
THRB
M03380_2.00 		Homo sapiens
DTGACCTBANTRAGGTCAH
DTGACCTYANTVAGGTCAH		 SELEX
Jolma et al.(2013)
THRB_2 		0.947 0.800
THRB
M03381_2.00 		Homo sapiens
NTGWCCTYADNTRAGGTCAH
DTGACCTYANHTRAGGWCAN		 SELEX
Jolma et al.(2013)
THRB_3 		0.947 0.800
THRB
M05629_2.00 		Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1 		0.947 0.800
THRB
M05630_2.00 		Homo sapiens
NRRGGTCAYGACCYYN
NRRGGTCRTGACCYYN		 SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2 		0.947 0.800
THRB
M05633_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1 		0.947 0.800
THRB
M05634_2.00 		Homo sapiens
TRAGGTCABVYVAGGTCAH
DTGACCTBRBVTGACCTYA		 SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2 		0.947 0.800
THRB
M09285_2.00 		Homo sapiens
VRVSYVABVKSAGGWCA
TGWCCTSMBVTBRSBYB		 Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C 		0.947 0.800
THRB
M11150_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01 		0.947 0.800
THRB
M05631_2.00 		Homo sapiens
NRGGTYRDRGGKYRN
NYRMCCYHYRACCYN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1 		0.947 0.800
THRB
M05632_2.00 		Homo sapiens
NNRGGTCAYGACCYBN
NVRGGTCRTGACCYNN		 SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2 		0.947 0.800
THRB
M05635_2.00 		Homo sapiens
NTGWCCTBRNYVAGGWCAN
NTGWCCTBRNYVAGGWCAN		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1 		0.947 0.800
THRB
M05636_2.00 		Homo sapiens
YRAGGWCAYGYRAGGWCAH
DTGWCCTYRCRTGWCCTYR		 SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2 		0.947 0.800
THRA
M03368_2.00 		Homo sapiens
DTGACCTYATVAGGTCAH
DTGACCTBATRAGGTCAH		 SELEX
Jolma et al.(2013)
THRA_1 		0.928 0.757
THRA
M09275_2.00 		Homo sapiens
RGKWSDNNYVAGGWSAN
NTSWCCTBRNNHSWMCY		 Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C 		0.928 0.757
Thra
M09333_2.00 		Mus musculus
VRGGKCANNYVRGGHCA
TGDCCYBRNNTGMCCYB		 Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C 		0.928 0.757
Thra
M09619_2.00 		Mus musculus
GGKCANNYVRGGHCA
TGDCCYBRNNTGMCC		 Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347 		0.928 0.757
THRA
M11135_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$T3RALPHA_Q6 		0.928 0.757
GAG_AVIER
M11193_2.00 		Avian erythroblastosis virus
VHNTRAGGTCACSSNN
NNSSGTGACCTYANDB		 Transfac
Matys et al.(2006)
V$T3R_01 		0.927 0.729
Q95WG3_ACRMI
M02424_2.00 		Acropora millepora
NRAGGTCAN
NTGACCTYN		 PBM
Weirauch et al.(2014)
pTH6144 		0.922 0.586
Hr4
M06435_2.00 		Drosophila melanogaster
AAGGTCA
TGACCTT		 B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546 		0.843 0.514
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
D918_01741 Nuclear receptor 38 107

Links

Other Nuclear receptor family TFs
Other Trichuris suis TFs

338 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DUX1_HUMAN Homo sapiens DUX1_HUMAN D
DUX3_HUMAN Homo sapiens DUX3_HUMAN D
ENSBTAP00000049813-D1 Bos grunniens ENSBTAP00000049813-D1 I
ENSCJAG00000023408 Callithrix jacchus ENSCJAG00000023408 I
ENSCSAG00000019478 Chlorocebus sabaeus ENSCSAG00000019478 I
DUX4 Homo sapiens ENSG00000260596 D
ENSGGOG00000013031 Gorilla gorilla ENSGGOG00000013031 I
ENSGGOG00000023520 Gorilla gorilla ENSGGOG00000023520 I
ENSLAFG00000027527 Loxodonta africana ENSLAFG00000027527 N
ENSLAFG00000031588 Loxodonta africana ENSLAFG00000031588 N
ENSMMUG00000014712 Macaca mulatta ENSMMUG00000014712 I
ENSMMUG00000016525 Macaca mulatta ENSMMUG00000016525 I
ENSMMUG00000017616 Macaca mulatta ENSMMUG00000017616 I
ENSMMUP00000019302 Macaca fascicularis ENSMMUP00000019302 I
ENSNLEG00000016146 Nomascus leucogenys ENSNLEG00000016146 I
ENSOARG00000010766 Ovis aries ENSOARG00000010766 I
ENSPPYG00000015280 Pongo abelii ENSPPYG00000015280 I
ENSTSYG00000006219 Tarsius syrichta ENSTSYG00000006219 I
ENSTSYG00000013427 Tarsius syrichta ENSTSYG00000013427 I
ENSTSYG00000019440 Tarsius syrichta ENSTSYG00000019440 I
ENSTSYG00000019450 Tarsius syrichta ENSTSYG00000019450 I
ENSTSYG00000019459 Tarsius syrichta ENSTSYG00000019459 I
ENSTSYG00000019549 Tarsius syrichta ENSTSYG00000019549 I
ENSTSYG00000019556 Tarsius syrichta ENSTSYG00000019556 I