scaffold265-EXSNAP2012.2 (Pristionchus exspectatus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 scaffold265-EXSNAP2012.2 T310237_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-1
M00686_2.00 		Caenorhabditis elegans
ARTGATCA
TGATCAYT		 PBM
Narasimhan et al.(2015)
pTH9322 		0.784 0.557
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold265-EXSNAP2012.2 Nuclear receptor 116 187

Links

Other Nuclear receptor family TFs
Other Pristionchus exspectatus TFs

132 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30170.m013669 Ricinus communis 30170.m013669 N
BGIOSGA023402 Oryza indica BGIOSGA023402 N
BRADI1G69207 Brachypodium distachyon BRADI1G69207 I
Cucsa.353040 Cucumis sativus Cucsa.353040 I
evm.TU.supercontig_129.70 Carica papaya evm.TU.supercontig_129.70 N
evm.TU.supercontig_99.39 Carica papaya evm.TU.supercontig_99.39 N
F775_28442 Aegilops tauschii F775_28442 N
GRMZM2G130459 Zea mays GRMZM2G130459 N
GRMZM2G146688 Zea mays GRMZM2G146688 N
LPERR02G26580 Leersia perrieri LPERR02G26580 N
Lus10011730.g Linum usitatissimum Lus10011730.g N
Lus10039650.g Linum usitatissimum Lus10039650.g N
MLOC_10221 Hordeum vulgare MLOC_10221 I
MLOC_76689 Hordeum vulgare MLOC_76689 N
OB02G39430 Oryza brachyantha OB02G39430 N
OB03G42600 Oryza brachyantha OB03G42600 N
OB06G31060 Oryza brachyantha OB06G31060 N
OBART02G32450 Oryza barthii OBART02G32450 N
OBART06G23380 Oryza barthii OBART06G23380 N
OLONG_002212 Oryza longistaminata OLONG_002212 N
OMERI02G31100 Oryza meridionalis OMERI02G31100 N
OMERI06G23370 Oryza meridionalis OMERI06G23370 N
OPUNC02G30010 Oryza punctata OPUNC02G30010 N
ORGLA02G0280000 Oryza glaberrima ORGLA02G0280000 N
ORGLA03G0090300 Oryza glaberrima ORGLA03G0090300 I
ORUFI02G34150 Oryza rufipogon ORUFI02G34150 N
OS02G0747600 Oryza sativa OS02G0747600 N
OS03G0232200 Oryza sativa OS03G0232200 I
Pavir.Aa00475 Panicum virgatum Pavir.Aa00475 N
Pavir.Ab02943 Panicum virgatum Pavir.Ab02943 N
PK15670.1 Cannabis sativa PK15670.1 N
Sb04g027940 Sorghum bicolor Sb04g027940 N
Si017580m.g Setaria italica Si017580m.g N
Traes_4AS_93BB8FB3E Triticum aestivum Traes_4AS_93BB8FB3E I
Traes_4DL_63ACC4A09 Triticum aestivum Traes_4DL_63ACC4A09 I
Traes_6AL_CE4E76E1A Triticum aestivum Traes_6AL_CE4E76E1A N
Traes_6BL_340C2A897 Triticum aestivum Traes_6BL_340C2A897 N
Traes_6DL_2BAA4B7AA Triticum aestivum Traes_6DL_2BAA4B7AA N
TRIUR3_24654 Triticum urartu TRIUR3_24654 N
BBM Vitis vinifera VIT_04s0023g00950 N