Tp53 (Rattus norvegicus)
p53

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00870 (P53) IPR011615 ENSRNOG00000010756 T311141_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Trp53
M03439_2.00 		Mus musculus
ACWTGYYNHHDSACWTGT
ACAWGTSHDDNRRCAWGT		 SELEX
Jolma et al.(2013)
Tp53_1 		0.938 0.938
Trp53
M03440_2.00 		Mus musculus
ACWTGTYHNNGACWTGT
ACAWGTCNNDRACAWGT		 SELEX
Jolma et al.(2013)
Tp53_2 		0.938 0.938
Trp53
M03441_2.00 		Mus musculus
RACATGYCYRGRCATGTY
RACATGYCYRGRCATGTY		 SELEX
Jolma et al.(2013)
Tp53_3 		0.871 0.871
Trp53
M09340_2.00 		Mus musculus
RRRCAWGYCCRGRCADGYMH
DKRCHTGYCYGGRCWTGYYY		 Misc
Kulakovskiy et al.(2013)
P53_MOUSE.H11MO.0.A 		0.871 0.871
TP53
M09337_2.00 		Homo sapiens
DRRCWTGYYCAGRCATGYYY
RRRCATGYCTGRRCAWGYYH		 Misc
Kulakovskiy et al.(2013)
P53_HUMAN.H11MO.0.A 		0.908 0.908
TP53
M09621_2.00 		Homo sapiens
NNDRCAWGYHNNDRCWWGYH
DRCWWGYHNNDRCWTGYHNN		 Misc
Heinz et al.(2010)
Saos-p53 		0.908 0.908
TP53
M11197_2.00 		Homo sapiens
RGACATGCCCGGGCATGTYC
GRACATGCCCGGGCATGTCY		 Transfac
Matys et al.(2006)
V$P53_01 		0.908 0.908
TP53
M11198_2.00 		Homo sapiens
NGRCWTGYYY
RRRCAWGYCN		 Transfac
Matys et al.(2006)
V$P53_02 		0.908 0.908
TP53
M11199_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_03 		0.908 0.908
TP53
M11200_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_04 		0.908 0.908
TP53
M11201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_05 		0.908 0.908
TP53
M11202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_Q3_01 		0.908 0.908
TP53
M11203_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$P53_Q3 		0.908 0.908
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000047840 p53 93 287
ENSRNOP00000068796 p53 93 271
ENSRNOP00000074031 p53 93 287

Links

Other p53 family TFs
Other Rattus norvegicus TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA006277 Oryza indica BGIOSGA006277 N
BGIOSGA022378 Oryza indica BGIOSGA022378 N
BGIOSGA037035 Oryza indica BGIOSGA037035 N
BRADI1G48350 Brachypodium distachyon BRADI1G48350 N
BRADI3G45470 Brachypodium distachyon BRADI3G45470 N
BRADI4G41960 Brachypodium distachyon BRADI4G41960 N
GRMZM2G034868 Zea mays GRMZM2G034868 N
GRMZM2G043250 Zea mays GRMZM2G043250 N
GRMZM2G048987 Zea mays GRMZM2G048987 N
MLOC_13034 Hordeum vulgare MLOC_13034 N
MLOC_62808 Hordeum vulgare MLOC_62808 N
OB02G27690 Oryza brachyantha OB02G27690 N
OB06G14070 Oryza brachyantha OB06G14070 N
OB12G13670 Oryza brachyantha OB12G13670 N
OLONG_000187 Oryza longistaminata OLONG_000187 N
OLONG_014957 Oryza longistaminata OLONG_014957 N
ONIVA02G22250 Oryza nivara ONIVA02G22250 N
ONIVA06G05610 Oryza nivara ONIVA06G05610 N
ORGLA02G0172700 Oryza glaberrima ORGLA02G0172700 N
ORGLA06G0040800 Oryza glaberrima ORGLA06G0040800 N
ORGLA12G0035900 Oryza glaberrima ORGLA12G0035900 N
OS02G0550900 Oryza sativa OS02G0550900 N
OS06G0166100 Oryza sativa OS06G0166100 N
OS12G0160900 Oryza sativa OS12G0160900 N
Pavir.Aa01718 Panicum virgatum Pavir.Aa01718 N
Pavir.Ba00843 Panicum virgatum Pavir.Ba00843 N
Pavir.Bb02863 Panicum virgatum Pavir.Bb02863 N
Pavir.Ca00202 Panicum virgatum Pavir.Ca00202 N
Pavir.Cb02030 Panicum virgatum Pavir.Cb02030 N
PDK_20s1320921g004 Phoenix dactylifera PDK_20s1320921g004 N
Sb02g034560 Sorghum bicolor Sb02g034560 N
Sb04g022400 Sorghum bicolor Sb04g022400 N
Sb08g003780 Sorghum bicolor Sb08g003780 N
Si009370m.g Setaria italica Si009370m.g N
Si016477m.g Setaria italica Si016477m.g N
Si029002m.g Setaria italica Si029002m.g N
Traes_5AS_385093B54 Triticum aestivum Traes_5AS_385093B54 N
Traes_5BS_BCC406654 Triticum aestivum Traes_5BS_BCC406654 N
Traes_5DS_620A46565 Triticum aestivum Traes_5DS_620A46565 N
Traes_7BS_1B525AFF5 Triticum aestivum Traes_7BS_1B525AFF5 N
Traes_7DS_559DD9894 Triticum aestivum Traes_7DS_559DD9894 N
TRIUR3_03719 Triticum urartu TRIUR3_03719 N
TRIUR3_25143 Triticum urartu TRIUR3_25143 N