CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

tp63 *(Xenopus tropicalis)* p53
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00870 (P53)	IPR011615	XB-GENE-479868	T311267_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Trp63 M09338_2.00	Mus musculus	DRCAWGYHCHRRCHTGYHN	NDRCADGYYDGDRCWTGYH	Misc Kulakovskiy et al.(2013) P63_MOUSE.H11MO.0.B	0.964	0.964
Trp73 M03438_2.00	Mus musculus	DRCAWGTYNNRACAYGYH	DRCRTGTYNNRACWTGYH	SELEX Jolma et al.(2013) Tp73_1	0.842	0.842
TP73 M08035_2.00	Homo sapiens	RCADGYHSDGRCWDG	CHWGYCHSDRCHTGY	ChIP-seq Chen et al.(2011) GSE15704_TP73_rapamycin	0.842	0.842
TP73 M08036_2.00	Homo sapiens	DRRCAWGYHCWGRCWTGYH	DRCAWGYCWGDRCWTGYYH	ChIP-seq Chen et al.(2011) GSE15704_TP73_vehicle	0.842	0.842
TP73 M08037_2.00	Homo sapiens	RCMDGYBCHNDCHKG	CMDGHNDGVRCHKGY	ChIP-seq Chen et al.(2011) GSE18650_TP73	0.842	0.842
TP73 M09336_2.00	Homo sapiens	NDDCHWGYYCMRRCHTGYH	DRCADGYYKGRRCWDGHHN	Misc Kulakovskiy et al.(2013) P73_HUMAN.H11MO.0.A	0.842	0.842
Trp73 M09339_2.00	Mus musculus	NDDCHWGYYCMRRCHTGYH	DRCADGYYKGRRCWDGHHN	Misc Kulakovskiy et al.(2013) P73_MOUSE.H11MO.0.B	0.842	0.842
TP73 M11196_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$P73_Q6	0.842	0.842
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AAI60954	p53	67	263	PAIPSNTDYAGPHTFDVSFQQSSTAKSATWTYSTELKKLYCQIAKTCPIQIKVLTNPPQGAVIRAMPVYKKAEHVTEVVKRCPNHELSREFNDGQIAPPSHLIRVEGNSHAQYVEDSITGRQSVLVPYEPPQVGTEFTTILYNFMCNSSCVGGMNRRPILIIVTLETRDGQVLGRRCFEARICACPGRDRKADEDSI
XP_002934096	p53	231	326	PAIPSNTDYPGPHSFDVSFQQSSTAKSATWTYSTDLKKLYCQIAKTCPIQVKVMTPPPQGAVVRAMPVYKKAEHVTEVVKRCPNHELSREFNEVEV
XP_002934096	p53	320	390	EFNEVEVGTEFTTILYNFMCNSSCVGGMNRRPILIIVTLETRDGQVLGRRCFEARICACPGRDRKADEDSI

Links
Other p53 family TFs
Other *Xenopus tropicalis* TFs

127 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
NCAS_0A06190	Naumovozyma castellii	NCAS_0A06190	N	0.000
NDAI_0D03180	Naumovozyma dairenensis	NDAI_0D03180	N	0.000
Scas_Contig703.29	Saccharomyces castellii	Scas_Contig703.29	N	0.000
TDEL_0D00730	Torulaspora delbrueckii	TDEL_0D00730	N	0.000
TPHA_0B01585	Tetrapisispora phaffii	TPHA_0B01585	N	0.000