ENSPMAG00000003112 (Petromyzon marinus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF05225 (HTH_psq) IPR007889 ENSPMAG00000003112 T313606_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		0.841 0.841
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.818 0.818
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.795 0.795
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.795 0.795
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.795 0.795
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPMAP00000003389 Pipsqueak 525 569

Links

Other Pipsqueak family TFs
Other Petromyzon marinus TFs

60 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R002601 Aptenodytes forsteri Afo_R002601 N 0.000
Alligator_sinensis_CCG009248.1 Alligator sinensis Alligator_sinensis_CCG009248.1 N 0.000
Brh_R006725 Buceros rhinoceros Brh_R006725 N 0.000
Cmyd_10007742 Chelonia mydas Cmyd_10007742 N 0.000
ENSACAG00000007731 Anolis carolinensis ENSACAG00000007731 N 0.000
ENSAMEG00000019898 Ailuropoda melanoleuca ENSAMEG00000019898 N 0.000
ENSAPLG00000002179 Anas platyrhynchos ENSAPLG00000002179 N 0.000
ZNF488 Cavia porcellus ENSCPOG00000000536 N 0.000
ZNF488 Equus caballus ENSECAG00000004188 N 0.000
ENSFALG00000007449 Ficedula albicollis ENSFALG00000007449 N 0.000
ZNF488 Felis catus ENSFCAG00000008960 N 0.000
ZNF488 Homo sapiens ENSG00000265763 N 0.000
prdm8 Gasterosteus aculeatus ENSGACG00000007142 N 0.000
ENSGALG00000005975 Gallus gallus ENSGALG00000005975 N 0.000
ENSLACG00000016046 Latimeria chalumnae ENSLACG00000016046 N 0.000
ENSLOCG00000003895 Lepisosteus oculatus ENSLOCG00000003895 N 0.000
ZNF488 Meleagris gallopavo ENSMGAG00000016885 N 0.000
ZNF488 Myotis lucifugus ENSMLUG00000030552 N 0.000
ENSMODG00000025038 Monodelphis domestica ENSMODG00000025038 N 0.000
ZNF488 Ornithorhynchus anatinus ENSOANG00000015412 N 0.000
ZNF488 Otolemur garnettii ENSOGAG00000001742 N 0.000
ENSONIG00000009552 Oreochromis niloticus ENSONIG00000009552 N 0.000
prdm8 Oryzias latipes ENSORLG00000008745 N 0.000
ENSP00000379054 Macaca fascicularis ENSP00000379054 N 0.000
ENSP00000379054-D1 Bos grunniens ENSP00000379054-D1 N 0.000
ENSPFOG00000004161 Poecilia formosa ENSPFOG00000004161 N 0.000
ENSSHAG00000015538 Sarcophilus harrisii ENSSHAG00000015538 N 0.000
ENSSSCG00000010373 Sus scrofa ENSSSCG00000010373 N 0.000
ENSSTOG00000015147 Ictidomys tridecemlineatus ENSSTOG00000015147 N 0.000
ZNF488 Tupaia belangeri ENSTBEG00000016364 N 0.000
ENSTGUG00000008050 Taeniopygia guttata ENSTGUG00000008050 N 0.000
prdm8 Tetraodon nigroviridis ENSTNIG00000016524 N 0.000
prdm8 Takifugu rubripes ENSTRUG00000012560 N 0.000
ENSXMAG00000014518 Xiphophorus maculatus ENSXMAG00000014518 N 0.000
Gfo_R002431 Geospiza fortis Gfo_R002431 N 0.000
Myotis_brandtii_ZNF488_10008743 Myotis brandtii Myotis_brandtii_ZNF488_10008743 N 0.000