Alligator_sinensis_CCG020164.1 (Alligator sinensis)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 Alligator_sinensis_CCG020164.1 T314417_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ENSMGAG00000009953
M02433_2.00 		Meleagris gallopavo
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH8649 		1.000 1.000
ENSACAG00000012432
M02430_2.00 		Anolis carolinensis
NNNCNAAWNN
NNWTTNGNNN		 PBM
Weirauch et al.(2014)
pTH9220 		0.956 0.956
lcorl
M02438_2.00 		Xenopus tropicalis
NYCNAAWHN
NDWTTNGRN		 PBM
Weirauch et al.(2014)
pTH8558 		0.956 0.956
ENSORLG00000000044
M02434_2.00 		Oryzias latipes
CCCAAAWT
AWTTTGGG		 PBM
Weirauch et al.(2014)
pTH9275 		0.911 0.911
ENSGACG00000007469
M02432_2.00 		Gasterosteus aculeatus
NVNMGAWACH
DGTWTCKNBN		 PBM
Weirauch et al.(2014)
pTH9179 		0.822 0.822
ENSORLG00000007805
M02435_2.00 		Oryzias latipes
SCNAAWNNNN
NNNNWTTNGS		 PBM
Weirauch et al.(2014)
pTH9277 		0.822 0.822
LCORL
M02431_2.00 		Choloepus hoffmanni
NNYNAAHNN
NNDTTNRNN		 PBM
Weirauch et al.(2014)
pTH9253 		0.800 0.800
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020164.1 Pipsqueak 350 395

Links

Other Pipsqueak family TFs
Other Alligator sinensis TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R002601 Aptenodytes forsteri Afo_R002601 N 0.000
Alligator_sinensis_CCG009248.1 Alligator sinensis Alligator_sinensis_CCG009248.1 N 0.000
Brh_R006725 Buceros rhinoceros Brh_R006725 N 0.000
Cmyd_10007742 Chelonia mydas Cmyd_10007742 N 0.000
ENSACAG00000007731 Anolis carolinensis ENSACAG00000007731 N 0.000
ENSAMEG00000019898 Ailuropoda melanoleuca ENSAMEG00000019898 N 0.000
ENSAPLG00000002179 Anas platyrhynchos ENSAPLG00000002179 N 0.000
ZNF488 Cavia porcellus ENSCPOG00000000536 N 0.000
ZNF488 Equus caballus ENSECAG00000004188 N 0.000
ENSFALG00000007449 Ficedula albicollis ENSFALG00000007449 N 0.000
ZNF488 Felis catus ENSFCAG00000008960 N 0.000
ZNF488 Homo sapiens ENSG00000265763 N 0.000
prdm8 Gasterosteus aculeatus ENSGACG00000007142 N 0.000
ENSGALG00000005975 Gallus gallus ENSGALG00000005975 N 0.000
ENSLACG00000016046 Latimeria chalumnae ENSLACG00000016046 N 0.000
ENSLOCG00000003895 Lepisosteus oculatus ENSLOCG00000003895 N 0.000
ZNF488 Meleagris gallopavo ENSMGAG00000016885 N 0.000
ZNF488 Myotis lucifugus ENSMLUG00000030552 N 0.000
ENSMODG00000025038 Monodelphis domestica ENSMODG00000025038 N 0.000
ENSNLEG00000015447 Nomascus leucogenys ENSNLEG00000015447 N 0.000
ZNF488 Ornithorhynchus anatinus ENSOANG00000015412 N 0.000
ZNF488 Otolemur garnettii ENSOGAG00000001742 N 0.000
ENSONIG00000009552 Oreochromis niloticus ENSONIG00000009552 N 0.000
prdm8 Oryzias latipes ENSORLG00000008745 N 0.000
ENSP00000379054 Macaca fascicularis ENSP00000379054 N 0.000
ENSPFOG00000004161 Poecilia formosa ENSPFOG00000004161 N 0.000
ENSSHAG00000015538 Sarcophilus harrisii ENSSHAG00000015538 N 0.000
ENSSSCG00000010373 Sus scrofa ENSSSCG00000010373 N 0.000
ENSSTOG00000015147 Ictidomys tridecemlineatus ENSSTOG00000015147 N 0.000
ZNF488 Tupaia belangeri ENSTBEG00000016364 N 0.000
ENSTGUG00000008050 Taeniopygia guttata ENSTGUG00000008050 N 0.000
prdm8 Tetraodon nigroviridis ENSTNIG00000016524 N 0.000
prdm8 Takifugu rubripes ENSTRUG00000012560 N 0.000
ENSXMAG00000014518 Xiphophorus maculatus ENSXMAG00000014518 N 0.000
Gfo_R002431 Geospiza fortis Gfo_R002431 N 0.000
Myotis_brandtii_ZNF488_10008743 Myotis brandtii Myotis_brandtii_ZNF488_10008743 N 0.000