DICVIV_12442 (Dictyocaulus viviparus)
Pipsqueak

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF05225 (HTH_psq) IPR007889 DICVIV_12442 T315022_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nasonia_NCBI_hmm1312624
M02436_2.00 		Nasonia vitripennis
NNNYNAAWNN
NNWTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9266 		0.795 0.795
For this family, TFs with SR scores > 0.778 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
DICVIV_12442 Pipsqueak 24 68

Links

Other Pipsqueak family TFs
Other Dictyocaulus viviparus TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F443_18315 Phytophthora parasitica F443_18315 N
fgenesh_masked-par_contig_1065-abinit-gene-0.12 Pythium arrhenomanes fgenesh_masked-par_contig_1065-abinit-gene-0.12 N
fgenesh_scip_prom.46568.8375 Phytophthora kernoviae fgenesh_scip_prom.46568.8375 N
HpaG807077 Hyaloperonospora arabidopsidis HpaG807077 N
HpaG807078 Hyaloperonospora arabidopsidis HpaG807078 N
maker-pag1_scaffold_194-fgenesh-gene-0.7 Pythium aphanidermatum maker-pag1_scaffold_194-fgenesh-gene-0.7 N
maker-pir_contig_292-snap-gene-0.21 Pythium irregulare maker-pir_contig_292-snap-gene-0.21 N
maker-piw_contig_2716-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_2716-fgenesh-gene-0.0 N
maker-pve_contig_37-snap-gene-0.50 Pythium vexans maker-pve_contig_37-snap-gene-0.50 N
Phyra81124 Phytophthora ramorum Phyra81124 N
Physo158880 Phytophthora sojae Physo158880 N
PITG_18417 Phytophthora infestans PITG_18417 N
PYU1_G001764 Pythium ultimum PYU1_G001764 N