CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GH10077
(
Drosophila grimshawi
)
Rel
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00554 (RHD_DNA_bind)
IPR011539
FBgn0117558
T317623_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
dl
M02712_2.00
Drosophila melanogaster
SGGGKTTTTYCV
BGRAAAAMCCCS
SELEX
Mathelier et al.(2014)
MA0022.1
0.994
0.994
dl
M02713_2.00
Drosophila melanogaster
GGGGWWTTCC
GGAAWWCCCC
SELEX
Mathelier et al.(2014)
MA0023.1
0.994
0.994
dl
M09691_2.00
Drosophila melanogaster
BRGRWTTYCCM
KGGRAAWYCYV
Misc
Kulakovskiy et al.(2009)
dl
0.994
0.994
dl
M11243_2.00
Drosophila melanogaster
GGGTTTTTCCV
BGGAAAAACCC
Transfac
Matys et al.(2006)
I$DL_01
0.994
0.994
dl
M11244_2.00
Drosophila melanogaster
BRDTTTTCYSD
HSRGAAAAHYV
Transfac
Matys et al.(2006)
I$DL_02
0.994
0.994
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0143983
Rel
49
219
VKITEQPAGKALRFRYECEGRSAGSIPGVNSTPENKTYPTIEIVGYKGRAVVVVSCVTKDTPYRPHPHNLVGKEGCKKGVCTLEISSETMRAVFSNLGIQCVKKKDIEAALKAREEIRVDPFKTGFSHRFQPSSIDLNSVRLCFQVFMESEQKGRFTSPLPPVVSEPIFDK
Links
Other
Rel
family TFs
Other
Drosophila grimshawi
TFs
53 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Eucgr.E01047
Eucalyptus grandis
Eucgr.E01047
N
mgf020447m
Mimulus guttatus
mgf020447m
N
OB12G26450
Oryza brachyantha
OB12G26450
N
PK28516.1
Cannabis sativa
PK28516.1
N
TRIUR3_29908
Triticum urartu
TRIUR3_29908
I