Gfo_R009589 (Geospiza fortis)
Rel

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00554 (RHD_DNA_bind) IPR011539 Gfo_R009589 T317787_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nfatc2
M09357_2.00 		Mus musculus
NWTTTTCCW
WGGAAAAWN		 Misc
Kulakovskiy et al.(2013)
NFAC2_MOUSE.H11MO.0.C 		0.979 0.979
NFATC2
M02441_2.00 		Homo sapiens
WNTTTCCRHN
NDYGGAAANW		 PBM
Weirauch et al.(2014)
pTH9196 		0.972 0.972
NFATC2
M05705_2.00 		Homo sapiens
DTTTCCATGGAAAM
KTTTCCATGGAAAH		 SELEX
Yin et al.(2017)
NFATC2_eDBD_HT-SELEX_1 		0.972 0.972
NFATC2
M05706_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_HT-SELEX_2 		0.972 0.972
NFATC2
M09346_2.00 		Homo sapiens
NWTTTTCCW
WGGAAAAWN		 Misc
Kulakovskiy et al.(2013)
NFAC2_HUMAN.H11MO.0.B 		0.972 0.972
NFATC2
M11221_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q4 		0.972 0.972
NFATC2
M11222_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q5 		0.972 0.972
NFATC2
M11223_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT1_Q6 		0.972 0.972
NFATC2
M08462_2.00 		Homo sapiens
TTTTCCA
TGGAAAA		 COMPILED
Mathelier et al.(2014)
MA0152.1 		0.972 0.972
NFATC2
M05707_2.00 		Homo sapiens
NTTTCCGCGGAAAN
NTTTCCGCGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_Methyl-HT-SELEX_1 		0.972 0.972
NFATC2
M05708_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC2_eDBD_Methyl-HT-SELEX_2 		0.972 0.972
NFATC1
M02443_2.00 		Meleagris gallopavo
NNTTTCCRNN
NNYGGAAANN		 PBM
Weirauch et al.(2014)
pTH8315 		0.860 0.860
Nfatc1
M09360_2.00 		Mus musculus
KABTCANWBTTTCCW
WGGAAAVWNTGAVTM		 Misc
Kulakovskiy et al.(2013)
NFAC1_MOUSE.H11MO.0.A 		0.860 0.860
nfatc1
M02446_2.00 		Xenopus tropicalis
NNTTTCCRNN
NNYGGAAANN		 PBM
Weirauch et al.(2014)
pTH8557 		0.846 0.846
NFATC3
M02440_2.00 		Homo sapiens
DNTTTCCRNN
NNYGGAAANH		 PBM
Weirauch et al.(2014)
pTH9192 		0.839 0.839
NFATC3
M05693_2.00 		Homo sapiens
WNTTTCCRYN
NRYGGAAANW		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_1 		0.839 0.839
NFATC3
M05694_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_2 		0.839 0.839
NFATC3
M05695_2.00 		Homo sapiens
DYGGAAANNNNNNNTTTCCRH
DYGGAAANNNNNNNTTTCCRH		 SELEX
Yin et al.(2017)
NFATC3_eDBD_HT-SELEX_3 		0.839 0.839
NFATC3
M09343_2.00 		Homo sapiens
RDTTTTCCA
TGGAAAAHY		 Misc
Kulakovskiy et al.(2013)
NFAC3_HUMAN.H11MO.0.B 		0.839 0.839
Nfatc3
M09359_2.00 		Mus musculus
RDTTTTCCA
TGGAAAAHY		 Misc
Kulakovskiy et al.(2013)
NFAC3_MOUSE.H11MO.0.B 		0.839 0.839
NFATC3
M11217_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT4_Q3 		0.839 0.839
NFATC3
M11218_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT4_Q5 		0.839 0.839
NFATC3
M05696_2.00 		Homo sapiens
WNTTTCCRYN
NRYGGAAANW		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_1 		0.839 0.839
NFATC3
M05697_2.00 		Homo sapiens
NTTTCCRYGGAAAN
NTTTCCRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_2 		0.839 0.839
NFATC3
M05698_2.00 		Homo sapiens
RYGGAAANHNNNDNTTTCCRY
RYGGAAANHNNNDNTTTCCRY		 SELEX
Yin et al.(2017)
NFATC3_eDBD_Methyl-HT-SELEX_3 		0.839 0.839
NFATC1
M02444_2.00 		Monodelphis domestica
NNDTTCCDNN
NNHGGAAHNN		 PBM
Weirauch et al.(2014)
pTH8401 		0.832 0.832
NFATC4
M01306_2.00 		Homo sapiens
NNNWWWVYRN
NYRBWWWNNN		 PBM
Lambert et al.(2019)
pTH9347 		0.818 0.818
NFATC1
M03449_2.00 		Homo sapiens
HKGRAAADDNWBTTTCCAYN
NRTGGAAAVWNHHTTTYCMD		 SELEX
Jolma et al.(2013)
NFATC1_1 		0.818 0.818
NFATC1
M03450_2.00 		Homo sapiens
TTTCCAYWRYGGAAA
TTTCCRYWRTGGAAA		 SELEX
Jolma et al.(2013)
NFATC1_2 		0.818 0.818
NFATC1
M03451_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Jolma et al.(2013)
NFATC1_3 		0.818 0.818
NFATC1
M02747_2.00 		Homo sapiens
DTTCCRYGGAA
TTCCRYGGAAH		 SELEX
Jolma et al.(2010)
NFATc1_dimer 		0.818 0.818
NFATC1
M02748_2.00 		Homo sapiens
GGAANDTTCC
GGAAHNTTCC		 SELEX
Jolma et al.(2010)
NFATc1_dimer_type2 		0.818 0.818
NFATC1
M02749_2.00 		Homo sapiens
WDTTTCCAY
RTGGAAAHW		 SELEX
Jolma et al.(2010)
NFATc1_monomer 		0.818 0.818
NFATC1
M05711_2.00 		Homo sapiens
NTTTCCATGGAAAN
NTTTCCATGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_HT-SELEX_1 		0.818 0.818
NFATC1
M05712_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_HT-SELEX_2 		0.818 0.818
NFATC4
M05701_2.00 		Homo sapiens
DBTTTCCRYN
NRYGGAAAVH		 SELEX
Yin et al.(2017)
NFATC4_eDBD_HT-SELEX_1 		0.818 0.818
NFATC4
M05702_2.00 		Homo sapiens
NKTTCCATGGAAMV
BKTTCCATGGAAMN		 SELEX
Yin et al.(2017)
NFATC4_eDBD_HT-SELEX_2 		0.818 0.818
NFATC1
M09349_2.00 		Homo sapiens
HBYHWBWBTTTCCWB
VWGGAAAVWVWDRVD		 Misc
Kulakovskiy et al.(2013)
NFAC1_HUMAN.H11MO.0.B 		0.818 0.818
NFATC4
M09345_2.00 		Homo sapiens
HNDBTTTCCN
NGGAAAVHND		 Misc
Kulakovskiy et al.(2013)
NFAC4_HUMAN.H11MO.0.C 		0.818 0.818
Nfatc4
M09354_2.00 		Mus musculus
HNDBTTTCCN
NGGAAAVHND		 Misc
Kulakovskiy et al.(2013)
NFAC4_MOUSE.H11MO.0.C 		0.818 0.818
NFATC1
M09625_2.00 		Homo sapiens
WBTTTCCAYY
RRTGGAAAVW		 Misc
Heinz et al.(2010)
Jurkat-NFATC1_Jolma_et_al. 		0.818 0.818
NFATC1
M11232_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q4 		0.818 0.818
NFATC1
M11233_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q5_01 		0.818 0.818
NFATC1
M11234_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT2_Q5 		0.818 0.818
NFATC4
M11219_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT3_Q3_01 		0.818 0.818
NFATC4
M11220_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFAT3_Q3 		0.818 0.818
NFATC1
M05713_2.00 		Homo sapiens
NTTTCCRYGGAAAN
NTTTCCRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_Methyl-HT-SELEX_1 		0.818 0.818
NFATC1
M05714_2.00 		Homo sapiens
NTTTCCRYNNRYGGAAAN
NTTTCCRYNNRYGGAAAN		 SELEX
Yin et al.(2017)
NFATC1_eDBD_Methyl-HT-SELEX_2 		0.818 0.818
NFATC4
M05703_2.00 		Homo sapiens
DNTTTCCRYN
NRYGGAAANH		 SELEX
Yin et al.(2017)
NFATC4_eDBD_Methyl-HT-SELEX_1 		0.818 0.818
NFATC4
M05704_2.00 		Homo sapiens
NKTTCCRYGGAAMN
NKTTCCRYGGAAMN		 SELEX
Yin et al.(2017)
NFATC4_eDBD_Methyl-HT-SELEX_2 		0.818 0.818
ENSTNIG00000018271
M02445_2.00 		Tetraodon nigroviridis
DNDTTCCRNN
NNYGGAAHNH		 PBM
Weirauch et al.(2014)
pTH9005 		0.797 0.797
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009589 Rel 365 525

Links

Other Rel family TFs
Other Geospiza fortis TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001830 Calypte anna Aan_R001830 N 0.000
ENSAMEG00000018175 Ailuropoda melanoleuca ENSAMEG00000018175 N 0.000
MXD3 Bos taurus ENSBTAG00000005010 N 0.000
MXD3 Canis familiaris ENSCAFG00000016437 N 0.000
ENSCJAG00000006943 Callithrix jacchus ENSCJAG00000006943 N 0.000
ENSCSAG00000008875 Chlorocebus sabaeus ENSCSAG00000008875 N 0.000
MXD3 Dasypus novemcinctus ENSDNOG00000017403 N 0.000
MXD4 Equus caballus ENSECAG00000002580 N 0.000
MXD3 Equus caballus ENSECAG00000021155 N 0.000
MXD3 Erinaceus europaeus ENSEEUG00000015798 N 0.000
MXD3 Echinops telfairi ENSETEG00000010972 N 0.000
ENSFALG00000000117 Ficedula albicollis ENSFALG00000000117 N 0.000
MXD3 Felis catus ENSFCAG00000001533 N 0.000
MXD3 Homo sapiens ENSG00000213347 N 0.000
ENSGGOG00000011764 Gorilla gorilla ENSGGOG00000011764 N 0.000
MXD3 Loxodonta africana ENSLAFG00000021836 N 0.000
ENSMEUG00000013427 Macropus eugenii ENSMEUG00000013427 N 0.000
ENSMLUG00000007019 Myotis lucifugus ENSMLUG00000007019 N 0.000
ENSMMUG00000009047 Macaca mulatta ENSMMUG00000009047 N 0.000
ENSMMUP00000033662 Macaca fascicularis ENSMMUP00000033662 N 0.000
MXD4 Monodelphis domestica ENSMODG00000004033 N 0.000
MXD3 Monodelphis domestica ENSMODG00000004791 N 0.000
ENSMPUG00000012200 Mustela putorius furo ENSMPUG00000012200 N 0.000
Mxd3 Mus musculus ENSMUSG00000021485 N 0.000
ENSNLEG00000012726 Nomascus leucogenys ENSNLEG00000012726 N 0.000
ENSOARG00000004235 Ovis aries ENSOARG00000004235 N 0.000
MXD4 Oryctolagus cuniculus ENSOCUG00000005063 N 0.000
MXD3 Oryctolagus cuniculus ENSOCUG00000022519 N 0.000
MXD3 Otolemur garnettii ENSOGAG00000032370 N 0.000
MXD3 Ochotona princeps ENSOPRG00000002125 N 0.000
ENSP00000389716-D1 Bos grunniens ENSP00000389716-D1 N 0.000
ENSPANG00000007888 Papio anubis ENSPANG00000007888 N 0.000
MXD3 Pteropus vampyrus ENSPVAG00000003828 N 0.000
Rab24 Rattus norvegicus ENSRNOG00000016539 N 0.000
ENSSHAG00000011878 Sarcophilus harrisii ENSSHAG00000011878 N 0.000
ENSSHAG00000013431 Sarcophilus harrisii ENSSHAG00000013431 N 0.000
MXD3 Sus scrofa ENSSSCG00000014041 N 0.000
ENSSTOG00000002697 Ictidomys tridecemlineatus ENSSTOG00000002697 N 0.000
MXD3 Tursiops truncatus ENSTTRG00000009572 N 0.000
Myotis_brandtii_MXD3_10032506 Myotis brandtii Myotis_brandtii_MXD3_10032506 N 0.000
mxd3 Xenopus tropicalis XB-GENE-867571 N 0.000
mxd3.L Xenopus laevis XB-GENE-867580 N 0.000