ENSORLG00000001269 (Oryzias latipes)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSORLG00000001269 T318420_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.736 0.747
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.736 0.747
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.736 0.747
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.736 0.747
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.736 0.747
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.736 0.747
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.736 0.747
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.736 0.747
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.736 0.747
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.736 0.747
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.736 0.747
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.736 0.747
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.736 0.747
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.736 0.747
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.736 0.747
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.714 0.646
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.714 0.646
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.714 0.646
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.714 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000001557 RFX 92 173

Links

Other RFX family TFs
Other Oryzias latipes TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00594 Capronia coronata A1O1_00594 I
A1O3_07754 Capronia epimyces A1O3_07754 I
A1O9_01837 Exophiala aquamarina A1O9_01837 I
A1O9_03872 Exophiala aquamarina A1O9_03872 N
AB10636.1 Alternaria brassicicola AB10636.1 N
ACRE_013750 Acremonium chrysogenum ACRE_013750 I
AOL_s00076g272 Arthrobotrys oligospora AOL_s00076g272 N
ARB_01321 Arthroderma benhamiae ARB_01321 I
ARB_03015 Arthroderma benhamiae ARB_03015 I
AUEXF2481DRAFT_24415 Aureobasidium subglaciale AUEXF2481DRAFT_24415 I
AUEXF2481DRAFT_4029 Aureobasidium subglaciale AUEXF2481DRAFT_4029 I
AUEXF2481DRAFT_456199 Aureobasidium subglaciale AUEXF2481DRAFT_456199 I
BAUCODRAFT_243073 Baudoinia compniacensis BAUCODRAFT_243073 N
BAUCODRAFT_45255 Baudoinia compniacensis BAUCODRAFT_45255 N
BAUCODRAFT_79055 Baudoinia compniacensis BAUCODRAFT_79055 I
BBA_01514 Beauveria bassiana BBA_01514 I
BBA_07071 Beauveria bassiana BBA_07071 I
BBA_09836 Beauveria bassiana BBA_09836 I
Bcin04g01240 Botrytis cinerea Bcin04g01240 I
Bcin07g01630 Botrytis cinerea Bcin07g01630 N
BDDG_02031 Blastomyces dermatitidis BDDG_02031 I
BDDG_05568 Blastomyces dermatitidis BDDG_05568 N
BDDG_06193 Blastomyces dermatitidis BDDG_06193 I
BDDG_09744 Blastomyces dermatitidis BDDG_09744 I
BGHDH14_bgh01598 Blumeria graminis BGHDH14_bgh01598 I
BN946_scf184775.g19 Trametes cinnabarina BN946_scf184775.g19 N
ACLA_040090 Aspergillus clavatus CADACLAG00003413 I
ACLA_070410 Aspergillus clavatus CADACLAG00006808 N
AFUA_2G11460 Aspergillus fumigatus CADAFUAG00004521 I
CADANGAG00001855 Aspergillus niger CADANGAG00001855 N
ANIA_05870 Aspergillus nidulans CADANIAG00007168 I
ANIA_06846 Aspergillus nidulans CADANIAG00007644 D
CADAORAG00008529 Aspergillus oryzae CADAORAG00008529 N
ATEG_08244 Aspergillus terreus CADATEAG00003887 N
NFIA_065070 Neosartorya fischeri CADNFIAG00006114 I
NFIA_086700 Neosartorya fischeri CADNFIAG00008233 I
CCM_04341 Cordyceps militaris CCM_04341 I
CERSUDRAFT_114532 Ceriporiopsis subvermispora CERSUDRAFT_114532 I
CFIO01_12268 Colletotrichum fioriniae CFIO01_12268 I
CGGC5_2102 Colletotrichum gloeosporioides CGGC5_2102 I
CH063_01368 Colletotrichum higginsianum CH063_01368 N
CHGG_04995 Chaetomium globosum CHGG_04995 I
CIMG_08192 Coccidioides immitis CIMG_08192 I
CLUG_01645 Candida lusitaniae CLUG_01645 N
CLUG_01645 Clavispora lusitaniae CLUG_01645 N
COCC4DRAFT_63629 Bipolaris maydis COCC4DRAFT_63629 N
COCCADRAFT_34097 Bipolaris zeicola COCCADRAFT_34097 N
COCMIDRAFT_101691 Bipolaris oryzae COCMIDRAFT_101691 N
COCMIDRAFT_107123 Bipolaris oryzae COCMIDRAFT_107123 I
COCMIDRAFT_22555 Bipolaris oryzae COCMIDRAFT_22555 I
COCSADRAFT_170559 Bipolaris sorokiniana COCSADRAFT_170559 N
COCVIDRAFT_108667 Bipolaris victoriae COCVIDRAFT_108667 N
COCVIDRAFT_20649 Bipolaris victoriae COCVIDRAFT_20649 I
CPC735_022090 Coccidioides posadasii CPC735_022090 I
CSUB01_08743 Colletotrichum sublineola CSUB01_08743 I
CSUB01_12509 Colletotrichum sublineola CSUB01_12509 I
DOTSEDRAFT_158220 Dothistroma septosporum DOTSEDRAFT_158220 I
DOTSEDRAFT_88360 Dothistroma septosporum DOTSEDRAFT_88360 N
estExt_fgenesh1_pm.C_chr_50216 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_50216 N
estExt_fgenesh1_pm.C_sca_18_chr2_1_00326 Nectria haematococca estExt_fgenesh1_pm.C_sca_18_chr2_1_00326 I
estExt_fgenesh2_pg.C_30094 Neurospora discreta estExt_fgenesh2_pg.C_30094 I
estExt_Genewise1.C_120294 Neurospora discreta estExt_Genewise1.C_120294 I
EURHEDRAFT_513477 Aspergillus ruber EURHEDRAFT_513477 N
e_gw1.3.1267.1 Cryphonectria parasitica e_gw1.3.1267.1 I
F503_05786 Ophiostoma piceae uamh F503_05786 I
FFUJ_04988 Fusarium fujikuroi FFUJ_04988 I
fgenesh1_pm.00168_#_452 Aspergillus carbonarius fgenesh1_pm.00168_#_452 I
fgenesh1_pm.00866_#_274 Aspergillus carbonarius fgenesh1_pm.00866_#_274 I
FGRRES_02854 Fusarium graminearum FGRRES_02854 I
FGRRES_06160 Fusarium graminearum FGRRES_06160 I
FIBRA_03539 Fibroporia radiculosa FIBRA_03539 I
FOMPIDRAFT_1024907 Fomitopsis pinicola FOMPIDRAFT_1024907 I
FOXG_08550 Fusarium oxysporum FOXG_08550 I
FPSE_05530 Fusarium pseudograminearum FPSE_05530 I
GALMADRAFT_249209 Galerina marginata GALMADRAFT_249209 I
GGTG_02947 Gaeumannomyces graminis GGTG_02947 N
GLRG_02776 Colletotrichum graminicola GLRG_02776 I
GMDG_07447 Pseudogymnoascus destructans GMDG_07447 N
gw1.10.415.1 Mycosphaerella fijiensis gw1.10.415.1 I
gw1.59.15.1 Mycosphaerella fijiensis gw1.59.15.1 N
gw1.9.126.1 Mycosphaerella graminicola gw1.9.126.1 I
H072_1134 Dactylellina haptotyla H072_1134 N
H101_03862 Trichophyton interdigitale H101_03862 I
H101_04164 Trichophyton interdigitale H101_04164 I
H101_07358 Trichophyton interdigitale H101_07358 I
H102_03415 Trichophyton rubrum H102_03415 I
H102_03722 Trichophyton rubrum H102_03722 I
H105_03436 Trichophyton soudanense H105_03436 I
H105_03749 Trichophyton soudanense H105_03749 I
HCBG_03369 Histoplasma capsulatum HCBG_03369 N
HCBG_04284 Histoplasma capsulatum HCBG_04284 N
HMPREF1120_08148 Exophiala dermatitidis HMPREF1120_08148 I
HPODL_04541 Ogataea parapolymorpha HPODL_04541 N
JAAARDRAFT_136956 Jaapia argillacea JAAARDRAFT_136956 I
KUCA_T00002773001 Kuraishia capsulata KUCA_T00002773001 I
KUCA_T00005789001 Kuraishia capsulata KUCA_T00005789001 I
Kwal_6732 Kluyveromyces waltii Kwal_6732 I
LELG_02863 Lodderomyces elongisporus LELG_02863 N
LEMA_P057360.1 Leptosphaeria maculans LEMA_P057360.1 N
M378DRAFT_197822 Amanita muscaria M378DRAFT_197822 I
M404DRAFT_130508 Pisolithus tinctorius M404DRAFT_130508 I
M413DRAFT_441943 Hebeloma cylindrosporum M413DRAFT_441943 I
M437DRAFT_14692 Aureobasidium melanogenum M437DRAFT_14692 I
M437DRAFT_56308 Aureobasidium melanogenum M437DRAFT_56308 I
M438DRAFT_317248 Aureobasidium pullulans M438DRAFT_317248 I
M438DRAFT_323991 Aureobasidium pullulans M438DRAFT_323991 I
M438DRAFT_344531 Aureobasidium pullulans M438DRAFT_344531 I
M438DRAFT_64434 Aureobasidium pullulans M438DRAFT_64434 I
MAC_00726 Metarhizium acridum MAC_00726 N
MAJ_01716 Metarhizium majus MAJ_01716 N
MAM_03911 Metarhizium album MAM_03911 N
MANI_020691 Metarhizium anisopliae MANI_020691 N
MAPG_00887 Magnaporthe poae MAPG_00887 N
MBM_01678 Marssonina brunnea MBM_01678 I
MBR_00349 Metarhizium brunneum MBR_00349 N
MCYG_02230 Microsporum canis MCYG_02230 I
MCYG_02230 Arthroderma otae MCYG_02230 I
MCYG_05833 Microsporum canis MCYG_05833 I
MCYG_05833 Arthroderma otae MCYG_05833 I
MGG_05153 Magnaporthe oryzae MGG_05153 I
MGG_07131 Magnaporthe oryzae MGG_07131 I
MGU_01192 Metarhizium guizhouense MGU_01192 N
MGYG_02927 Microsporum gypseum MGYG_02927 I
MGYG_03225 Microsporum gypseum MGYG_03225 I
MGYG_06143 Microsporum gypseum MGYG_06143 I
Moror_6819 Moniliophthora roreri Moror_6819 I
MPH_01921 Macrophomina phaseolina MPH_01921 I
MPH_05611 Macrophomina phaseolina MPH_05611 N
MYCFIDRAFT_107799 Pseudocercospora fijiensis MYCFIDRAFT_107799 I
MYCFIDRAFT_216484 Pseudocercospora fijiensis MYCFIDRAFT_216484 N
Mycgr3G100243 Zymoseptoria tritici Mycgr3G100243 N
Mycgr3G11650 Zymoseptoria tritici Mycgr3G11650 I
MYCTH_73708 Myceliophthora thermophila MYCTH_73708 I
NCU05294 Neurospora crassa NCU05294 D
NCU08658 Neurospora crassa NCU08658 D
NechaG103398 Fusarium solani NechaG103398 I
NEUTE1DRAFT_121594 Neurospora tetrasperma NEUTE1DRAFT_121594 I
NEUTE1DRAFT_39574 Neurospora tetrasperma NEUTE1DRAFT_39574 I
OCS_01600 Ophiocordyceps sinensis OCS_01600 I
OIDMADRAFT_109168 Oidiodendron maius OIDMADRAFT_109168 I
OIDMADRAFT_152619 Oidiodendron maius OIDMADRAFT_152619 N
OIDMADRAFT_42277 Oidiodendron maius OIDMADRAFT_42277 I
PAAG_02753 Paracoccidioides sp lutzii PAAG_02753 N
PAAG_03678 Paracoccidioides sp lutzii PAAG_03678 I
PABG_00737 Paracoccidioides brasiliensis PABG_00737 I
PABG_03226 Paracoccidioides brasiliensis PABG_03226 N
PAXRUDRAFT_132889 Paxillus rubicundulus PAXRUDRAFT_132889 I
Pc15g00340 Penicillium chrysogenum Pc15g00340 N
PCH_Pc15g00340 Penicillium rubens PCH_Pc15g00340 N
PDE_06431 Penicillium oxalicum PDE_06431 N
PDE_08558 Penicillium oxalicum PDE_08558 I
PDE_09179 Penicillium oxalicum PDE_09179 I
PDIP_10950 Penicillium digitatum PDIP_10950 N
PEX1_002010 Penicillium expansum PEX1_002010 N
PFICI_05184 Pestalotiopsis fici PFICI_05184 I
PILCRDRAFT_51 Piloderma croceum PILCRDRAFT_51 I
PISMIDRAFT_675317 Pisolithus microcarpus PISMIDRAFT_675317 I
PITC_071780 Penicillium italicum PITC_071780 N
PLEOSDRAFT_158391 Pleurotus ostreatus PLEOSDRAFT_158391 I
PMAA_014320 Talaromyces marneffei PMAA_014320 N
PMAA_014320 Penicillium marneffei PMAA_014320 N
PMAA_041870 Talaromyces marneffei PMAA_041870 I
PMAA_041870 Penicillium marneffei PMAA_041870 I
PMAA_048690 Talaromyces marneffei PMAA_048690 N
PMAA_048690 Penicillium marneffei PMAA_048690 N
PTRG_11285 Pyrenophora triticirepentis PTRG_11285 N
PTT_11312 Pyrenophora teres PTT_11312 N
PV04_10066 Capronia semiimmersa PV04_10066 I
PV05_03077 Exophiala xenobiotica PV05_03077 I
PV05_03582 Exophiala xenobiotica PV05_03582 I
PV05_05867 Exophiala xenobiotica PV05_05867 N
PV06_08173 Exophiala oligosperma PV06_08173 N
PV07_01234 Cladophialophora immunda PV07_01234 I
PV07_01614 Cladophialophora immunda PV07_01614 I
PV07_03849 Cladophialophora immunda PV07_03849 N
PV08_05182 Exophiala spinifera PV08_05182 N
PV09_06702 Verruconis gallopava PV09_06702 I
PV10_06359 Exophiala mesophila PV10_06359 I
PV10_09026 Exophiala mesophila PV10_09026 N
PV11_00424 Exophiala sideris PV11_00424 N
PVAR5_2500 Byssochlamys spectabilis PVAR5_2500 I
PVAR5_3215 Byssochlamys spectabilis PVAR5_3215 I
S40285_00977 Stachybotrys chlorohalonata S40285_00977 I
S40288_06232 Stachybotrys chartarum S40288_06232 I
SAPIO_CDS4281 Scedosporium apiospermum SAPIO_CDS4281 N
SAPIO_CDS7129 Scedosporium apiospermum SAPIO_CDS7129 N
SEPMUDRAFT_150864 Sphaerulina musiva SEPMUDRAFT_150864 N
SEPMUDRAFT_92213 Sphaerulina musiva SEPMUDRAFT_92213 I
SERLA73DRAFT_159962 Serpula lacrymans SERLA73DRAFT_159962 I
SETTUDRAFT_172422 Setosphaeria turcica SETTUDRAFT_172422 N
SJAG_00926 Schizosaccharomyces japonicus SJAG_00926 I
SMAC_01696 Sordaria macrospora SMAC_01696 I
SMAC_03743 Sordaria macrospora SMAC_03743 I
SNOG_09854 Stagonospora nodorum SNOG_09854 I
SNOG_09854 Phaeosphaeria nodorum SNOG_09854 I
SNOG_13663 Stagonospora nodorum SNOG_13663 N
SNOG_13663 Phaeosphaeria nodorum SNOG_13663 N
SOCG_00244 Schizosaccharomyces octosporus SOCG_00244 I
SPAPADRAFT_61965 Spathaspora passalidarum SPAPADRAFT_61965 N
gsf1 Schizosaccharomyces pombe SPBC15D4.02 I
SPOG_02829 Schizosaccharomyces cryophilus SPOG_02829 I
SS1G_01353 Sclerotinia sclerotiorum SS1G_01353 N
TEQG_01335 Trichophyton equinum TEQG_01335 I
TEQG_05320 Trichophyton equinum TEQG_05320 I
TEQG_06790 Trichophyton equinum TEQG_06790 I
TESG_05486 Trichophyton tonsurans TESG_05486 I
TESG_06426 Trichophyton tonsurans TESG_06426 I
TESG_06981 Trichophyton tonsurans TESG_06981 I
THITE_11494 Thielavia terrestris THITE_11494 I
THITE_2115656 Thielavia terrestris THITE_2115656 I
TRIATDRAFT_31829 Trichoderma atroviride TRIATDRAFT_31829 I
TRIATDRAFT_34316 Trichoderma atroviride TRIATDRAFT_34316 I
TRIREDRAFT_106244 Trichoderma reesei TRIREDRAFT_106244 I
TRIREDRAFT_53106 Trichoderma reesei TRIREDRAFT_53106 I
TRIREDRAFT_55274 Trichoderma reesei TRIREDRAFT_55274 I
TRIVIDRAFT_28488 Trichoderma virens TRIVIDRAFT_28488 N
TRIVIDRAFT_55531 Trichoderma virens TRIVIDRAFT_55531 I
TRV_01730 Trichophyton verrucosum TRV_01730 I
TRV_07383 Trichophyton verrucosum TRV_07383 I
TSTA_038740 Talaromyces stipitatus TSTA_038740 I
TSTA_076120 Talaromyces stipitatus TSTA_076120 I
TSTA_122850 Talaromyces stipitatus TSTA_122850 I
U727_00433201101 Penicillium solitum U727_00433201101 N
UCRNP2_3613 Neofusicoccum parvum UCRNP2_3613 N
V499_04479 Pseudogymnoascus pannorum V499_04479 N
V565_106980 Rhizoctonia solani V565_106980 N
VDAG_08992 Verticillium dahliae VDAG_08992 I
VDBG_02399 Verticillium albo atrum VDBG_02399 I
VDBG_02399 Verticillium alfalfae VDBG_02399 I
VHEMI02171 Torrubiella hemipterigena VHEMI02171 I
VHEMI03513 Torrubiella hemipterigena VHEMI03513 I
W97_05295 Coniosporium apollinis W97_05295 N
X797_005336 Metarhizium robertsii X797_005336 N
X797_008651 Metarhizium robertsii X797_008651 I
YALI0_D23045g Yarrowia lipolytica YALI0_D23045g I
Z519_01437 Cladophialophora bantiana Z519_01437 I