rfx7 (Oryzias latipes)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSORLG00000008583 T318423_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.764 0.899
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.764 0.899
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.764 0.899
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.764 0.899
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.696 0.582
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.696 0.582
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.696 0.582
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.696 0.582
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.696 0.582
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.696 0.582
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.696 0.582
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.696 0.582
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.696 0.582
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.696 0.582
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.696 0.582
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.696 0.582
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.696 0.582
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.696 0.582
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.696 0.582
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000010774 RFX 8 87

Links

Other RFX family TFs
Other Oryzias latipes TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R005725 Aptenodytes forsteri Afo_R005725 N
Brh_R013360 Buceros rhinoceros Brh_R013360 N
Cmyd_10003651 Chelonia mydas Cmyd_10003651 N
KCMF1 Anolis carolinensis ENSACAG00000005906 N
ENSAMEG00000002032 Ailuropoda melanoleuca ENSAMEG00000002032 N
ENSAMXG00000006684 Astyanax mexicanus ENSAMXG00000006684 N
ENSAPLG00000013426 Anas platyrhynchos ENSAPLG00000013426 N
KCMF1 Bos taurus ENSBTAG00000020630 N
ENSBTAP00000052676-D1 Bos grunniens ENSBTAP00000052676-D1 N
KCMF1 Canis familiaris ENSCAFG00000007871 N
KCMF1 Choloepus hoffmanni ENSCHOG00000005786 N
ENSCJAG00000019735 Callithrix jacchus ENSCJAG00000019735 N
KCMF1 Cavia porcellus ENSCPOG00000023050 N
kcmf1 Danio rerio ENSDARG00000067656 N
KCMF1 Dasypus novemcinctus ENSDNOG00000047192 N
ENSDORG00000002248 Dipodomys ordii ENSDORG00000002248 N
KCMF1 Equus caballus ENSECAG00000024834 N
ENSETEG00000001809 Echinops telfairi ENSETEG00000001809 N
ENSFALG00000005137 Ficedula albicollis ENSFALG00000005137 N
KCMF1 Felis catus ENSFCAG00000026410 N
KCMF1 Homo sapiens ENSG00000176407 N
kcmf1 Gasterosteus aculeatus ENSGACG00000016222 N
ENSGALG00000014441 Gallus gallus ENSGALG00000014441 N
KCMF1 Gorilla gorilla ENSGGOG00000009501 N
ENSGMOG00000014478 Gadus morhua ENSGMOG00000014478 N
KCMF1 Loxodonta africana ENSLAFG00000018643 N
ENSMEUG00000003898 Macropus eugenii ENSMEUG00000003898 N
KCMF1 Microcebus murinus ENSMICG00000016473 N
KCMF1 Myotis lucifugus ENSMLUG00000000979 N
KCMF1 Macaca mulatta ENSMMUG00000001414 N
KCMF1 Monodelphis domestica ENSMODG00000015567 N
ENSMPUG00000008632 Mustela putorius furo ENSMPUG00000008632 N
Kcmf1 Mus musculus ENSMUSG00000055239 N
ENSNLEG00000001418 Nomascus leucogenys ENSNLEG00000001418 N
KCMF1 Ornithorhynchus anatinus ENSOANG00000007129 N
ENSOARG00000020445 Ovis aries ENSOARG00000020445 N
KCMF1 Oryctolagus cuniculus ENSOCUG00000002533 N
KCMF1 Otolemur garnettii ENSOGAG00000034863 N
KCMF1 Ochotona princeps ENSOPRG00000009018 N
ENSPANG00000007610 Papio anubis ENSPANG00000007610 N
KCMF1 Procavia capensis ENSPCAG00000008538 N
ENSPPYG00000012235 Pongo abelii ENSPPYG00000012235 N
ENSPSIG00000012230 Pelodiscus sinensis ENSPSIG00000012230 N
KCMF1 Pan troglodytes ENSPTRG00000012127 N
KCMF1 Pteropus vampyrus ENSPVAG00000009122 N
Kcmf1 Rattus norvegicus ENSRNOG00000015097 N
ENSSHAG00000009198 Sarcophilus harrisii ENSSHAG00000009198 N
KCMF1 Sus scrofa ENSSSCG00000008242 N
ENSSTOG00000021528 Ictidomys tridecemlineatus ENSSTOG00000021528 N
KCMF1 Tupaia belangeri ENSTBEG00000016438 N
KCMF1 Taeniopygia guttata ENSTGUG00000000265 N
ENSTSYG00000009776 Tarsius syrichta ENSTSYG00000009776 N
KCMF1 Tursiops truncatus ENSTTRG00000001934 N
Gfo_R004112 Geospiza fortis Gfo_R004112 N
Gfo_R013520 Geospiza fortis Gfo_R013520 N
Pvit_16118 Pogona vitticeps Pvit_16118 N
Tal_R012527 Tyto alba Tal_R012527 N
kcmf1 Xenopus tropicalis XB-GENE-1021676 N
kcmf1.L Xenopus laevis XB-GENE-1021681 N