GG10435 (Drosophila erecta)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 FBgn0102744 T318588_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.685 0.519
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.685 0.519
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.685 0.519
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.685 0.519
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.672 0.468
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.672 0.468
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.672 0.468
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.672 0.468
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.672 0.468
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.672 0.468
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.672 0.468
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.672 0.468
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.672 0.468
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.672 0.468
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.672 0.468
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.672 0.468
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.672 0.468
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.672 0.468
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.672 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0128981 RFX 305 383

Links

Other RFX family TFs
Other Drosophila erecta TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_02831 Capronia epimyces A1O3_02831 N
AOL_s00076g415 Arthrobotrys oligospora AOL_s00076g415 I
ARB_05109 Arthroderma benhamiae ARB_05109 I
AUEXF2481DRAFT_112381 Aureobasidium subglaciale AUEXF2481DRAFT_112381 N
BAUCODRAFT_29699 Baudoinia compniacensis BAUCODRAFT_29699 N
COCCADRAFT_22830 Bipolaris zeicola COCCADRAFT_22830 N
COCMIDRAFT_32511 Bipolaris oryzae COCMIDRAFT_32511 N
COCSADRAFT_201838 Bipolaris sorokiniana COCSADRAFT_201838 N
COCVIDRAFT_104413 Bipolaris victoriae COCVIDRAFT_104413 N
DOTSEDRAFT_67989 Dothistroma septosporum DOTSEDRAFT_67989 N
DRE_06459 Drechslerella stenobrocha DRE_06459 I
EPUS_02316 Endocarpon pusillum EPUS_02316 N
estExt_Genewise1.C_12121 Mycosphaerella fijiensis estExt_Genewise1.C_12121 N
estExt_Genewise1.C_60195 Cochliobolus heterostrophus C5 estExt_Genewise1.C_60195 N
GMDG_05434 Pseudogymnoascus destructans GMDG_05434 N
GSTUM_00012254001 Tuber melanosporum GSTUM_00012254001 I
gw1.1.2094.1 Mycosphaerella graminicola gw1.1.2094.1 N
H072_5429 Dactylellina haptotyla H072_5429 I
H101_02474 Trichophyton interdigitale H101_02474 I
H102_05466 Trichophyton rubrum H102_05466 I
H105_05509 Trichophyton soudanense H105_05509 I
LEMA_P051420.1 Leptosphaeria maculans LEMA_P051420.1 N
M437DRAFT_59053 Aureobasidium melanogenum M437DRAFT_59053 N
M438DRAFT_299670 Aureobasidium pullulans M438DRAFT_299670 N
MGYG_08173 Microsporum gypseum MGYG_08173 I
MPH_03457 Macrophomina phaseolina MPH_03457 N
MYCFIDRAFT_95483 Pseudocercospora fijiensis MYCFIDRAFT_95483 N
Mycgr3G20893 Zymoseptoria tritici Mycgr3G20893 N
PTRG_00830 Pyrenophora triticirepentis PTRG_00830 N
PV09_02303 Verruconis gallopava PV09_02303 N
SEPMUDRAFT_145995 Sphaerulina musiva SEPMUDRAFT_145995 N
SETTUDRAFT_181417 Setosphaeria turcica SETTUDRAFT_181417 N
SNOG_07131 Stagonospora nodorum SNOG_07131 N
TEQG_02389 Trichophyton equinum TEQG_02389 I
TRV_07860 Trichophyton verrucosum TRV_07860 I
UCRNP2_1954 Neofusicoccum parvum UCRNP2_1954 N
V499_09210 Pseudogymnoascus pannorum V499_09210 N
W97_00606 Coniosporium apollinis W97_00606 N