GH18082 (Drosophila grimshawi)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 FBgn0125550 T318590_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.685 0.519
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.685 0.519
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.685 0.519
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.685 0.519
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.670 0.468
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.670 0.468
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.670 0.468
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.670 0.468
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.670 0.468
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.670 0.468
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.670 0.468
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.670 0.468
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.670 0.468
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.670 0.468
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.670 0.468
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.670 0.468
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.670 0.468
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.670 0.468
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.670 0.468
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0151988 RFX 307 385

Links

Other RFX family TFs
Other Drosophila grimshawi TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R008171 Calypte anna Aan_R008171 I
Afo_R004362 Aptenodytes forsteri Afo_R004362 I
Alligator_sinensis_CCG005573.1 Alligator sinensis Alligator_sinensis_CCG005573.1 I
BAC58028 Xenopus laevis BAC58028 I
Brh_R010009 Buceros rhinoceros Brh_R010009 I
Cmyd_10008669 Chelonia mydas Cmyd_10008669 I
CXXC5 Anolis carolinensis ENSACAG00000002186 I
ENSAMEG00000011210 Ailuropoda melanoleuca ENSAMEG00000011210 I
ENSAMEG00000011282 Ailuropoda melanoleuca ENSAMEG00000011282 I
ENSAMXG00000005579 Astyanax mexicanus ENSAMXG00000005579 I
ENSAMXG00000016016 Astyanax mexicanus ENSAMXG00000016016 I
ENSAMXG00000018855 Astyanax mexicanus ENSAMXG00000018855 I
ENSAMXG00000025596 Astyanax mexicanus ENSAMXG00000025596 I
ENSAPLG00000014751 Anas platyrhynchos ENSAPLG00000014751 I
ENSBTAG00000001751 Bos taurus ENSBTAG00000001751 I
CXXC5 Bos taurus ENSBTAG00000003986 I
ENSBTAP00000005204-D1 Bos grunniens ENSBTAP00000005204-D1 I
CXXC5 Canis familiaris ENSCAFG00000005714 I
TET3 Canis familiaris ENSCAFG00000008728 I
ENSCAFG00000031237 Canis familiaris ENSCAFG00000031237 I
ENSCJAG00000015701 Callithrix jacchus ENSCJAG00000015701 I
CXXC5 Cavia porcellus ENSCPOG00000001156 I
ENSCPOG00000021934 Cavia porcellus ENSCPOG00000021934 I
ENSCSAG00000004010 Chlorocebus sabaeus ENSCSAG00000004010 I
ENSCSAG00000013001 Chlorocebus sabaeus ENSCSAG00000013001 I
ENSCSAG00000015514 Chlorocebus sabaeus ENSCSAG00000015514 I
cxxc5b Danio rerio ENSDARG00000075735 I
cxxc4 Danio rerio ENSDARG00000077817 I
cxxc5a Danio rerio ENSDARG00000078865 I
CABZ01081359.1 Danio rerio ENSDARG00000104578 I
CXXC5 Dasypus novemcinctus ENSDNOG00000008161 I
TET3 Dasypus novemcinctus ENSDNOG00000047130 I
ENSDORG00000003728 Dipodomys ordii ENSDORG00000003728 I
CXXC5 Equus caballus ENSECAG00000016958 I
CXXC5 Erinaceus europaeus ENSEEUG00000008125 I
ENSETEG00000009591 Echinops telfairi ENSETEG00000009591 I
ENSFALG00000009467 Ficedula albicollis ENSFALG00000009467 I
CXXC5 Felis catus ENSFCAG00000010527 I
CXXC4 Homo sapiens ENSG00000168772 I
CXXC5 Homo sapiens ENSG00000171604 D
TET3 Homo sapiens ENSG00000187605 I
ENSGACG00000017555 Gasterosteus aculeatus ENSGACG00000017555 I
cxxc5a Gasterosteus aculeatus ENSGACG00000020657 I
CXXC5 Gallus gallus ENSGALG00000000884 I
CXXC5 Gorilla gorilla ENSGGOG00000014181 I
ENSGGOG00000028495 Gorilla gorilla ENSGGOG00000028495 I
ENSGMOG00000019812 Gadus morhua ENSGMOG00000019812 I
ENSLACG00000003110 Latimeria chalumnae ENSLACG00000003110 I
ENSLACG00000011147 Latimeria chalumnae ENSLACG00000011147 I
CXXC5 Loxodonta africana ENSLAFG00000011784 I
ENSLAFG00000030012 Loxodonta africana ENSLAFG00000030012 I
ENSLOCG00000012594 Lepisosteus oculatus ENSLOCG00000012594 I
ENSLOCG00000012610 Lepisosteus oculatus ENSLOCG00000012610 I
ENSMEUG00000015364 Macropus eugenii ENSMEUG00000015364 I
CXXC5 Meleagris gallopavo ENSMGAG00000003042 I
CXXC5 Microcebus murinus ENSMICG00000002899 I
CXXC5 Myotis lucifugus ENSMLUG00000003056 I
ENSMLUG00000003691 Myotis lucifugus ENSMLUG00000003691 I
CXXC5 Macaca mulatta ENSMMUG00000001941 I
CXXC4 Macaca mulatta ENSMMUG00000011660 I
CXXC5 Monodelphis domestica ENSMODG00000011772 I
ENSMODG00000020651 Monodelphis domestica ENSMODG00000020651 I
ENSMPUG00000007806 Mustela putorius furo ENSMPUG00000007806 I
ENSMPUG00000009101 Mustela putorius furo ENSMPUG00000009101 I
ENSMPUG00000009175 Mustela putorius furo ENSMPUG00000009175 I
Tet3 Mus musculus ENSMUSG00000034832 I
Cxxc4 Mus musculus ENSMUSG00000044365 I
Cxxc5 Mus musculus ENSMUSG00000046668 I
ENSNLEG00000000317 Nomascus leucogenys ENSNLEG00000000317 I
ENSNLEG00000009189 Nomascus leucogenys ENSNLEG00000009189 I
ENSNLEG00000013306 Nomascus leucogenys ENSNLEG00000013306 I
ENSOANG00000008235 Ornithorhynchus anatinus ENSOANG00000008235 I
ENSOANG00000009530 Ornithorhynchus anatinus ENSOANG00000009530 I
ENSOARG00000010827 Ovis aries ENSOARG00000010827 I
ENSOARG00000012255 Ovis aries ENSOARG00000012255 I
ENSOCUG00000015536 Oryctolagus cuniculus ENSOCUG00000015536 I
TET3 Oryctolagus cuniculus ENSOCUG00000016640 I
CXXC5 Otolemur garnettii ENSOGAG00000024233 I
ENSOGAG00000026362 Otolemur garnettii ENSOGAG00000026362 I
ENSONIG00000005000 Oreochromis niloticus ENSONIG00000005000 I
ENSONIG00000017539 Oreochromis niloticus ENSONIG00000017539 I
ENSONIG00000020654 Oreochromis niloticus ENSONIG00000020654 I
CXXC5 Ochotona princeps ENSOPRG00000003163 I
cxxc5a Oryzias latipes ENSORLG00000006108 I
ENSORLG00000006474 Oryzias latipes ENSORLG00000006474 I
ENSP00000302543 Macaca fascicularis ENSP00000302543 I
ENSP00000378248 Macaca fascicularis ENSP00000378248 I
ENSP00000378248-D1 Bos grunniens ENSP00000378248-D1 I
ENSPANG00000011930 Papio anubis ENSPANG00000011930 I
ENSPANG00000024069 Papio anubis ENSPANG00000024069 I
CXXC5 Procavia capensis ENSPCAG00000001216 I
ENSPCAG00000002905 Procavia capensis ENSPCAG00000002905 I
ENSPFOG00000003666 Poecilia formosa ENSPFOG00000003666 I
ENSPFOG00000012064 Poecilia formosa ENSPFOG00000012064 I
ENSPFOG00000012083 Poecilia formosa ENSPFOG00000012083 I
ENSPFOG00000018974 Poecilia formosa ENSPFOG00000018974 I
ENSPFOG00000019888 Poecilia formosa ENSPFOG00000019888 I
ENSPPYG00000012286 Pongo abelii ENSPPYG00000012286 I
ENSPPYG00000014973 Pongo abelii ENSPPYG00000014973 I
ENSPPYG00000015845 Pongo abelii ENSPPYG00000015845 I
ENSPSIG00000010569 Pelodiscus sinensis ENSPSIG00000010569 I
ENSPSIG00000013782 Pelodiscus sinensis ENSPSIG00000013782 I
ENSPTRG00000016332 Pan troglodytes ENSPTRG00000016332 I
CXXC5 Pan troglodytes ENSPTRG00000017304 I
CXXC4 Pteropus vampyrus ENSPVAG00000001501 I
Cxxc5 Rattus norvegicus ENSRNOG00000003734 I
Tet3 Rattus norvegicus ENSRNOG00000011387 I
Cxxc5 Rattus norvegicus ENSRNOG00000032878 I
Cxxc4 Rattus norvegicus ENSRNOG00000045764 I
CXXC5 Sorex araneus ENSSARG00000013369 I
ENSSARG00000013794 Sorex araneus ENSSARG00000013794 I
ENSSHAG00000002308 Sarcophilus harrisii ENSSHAG00000002308 I
ENSSHAG00000012293 Sarcophilus harrisii ENSSHAG00000012293 I
TET3 Sus scrofa ENSSSCG00000008292 I
ENSSSCG00000009159 Sus scrofa ENSSSCG00000009159 I
ENSSSCG00000014357 Sus scrofa ENSSSCG00000014357 I
CXXC4 Sus scrofa ENSSSCG00000025621 I
ENSSTOG00000020058 Ictidomys tridecemlineatus ENSSTOG00000020058 I
ENSSTOG00000025994 Ictidomys tridecemlineatus ENSSTOG00000025994 I
CXXC5 Tupaia belangeri ENSTBEG00000006970 I
CXXC5 Taeniopygia guttata ENSTGUG00000001608 I
ENSTGUG00000003779 Taeniopygia guttata ENSTGUG00000003779 I
cxxc5b Tetraodon nigroviridis ENSTNIG00000000647 I
ENSTNIG00000018036 Tetraodon nigroviridis ENSTNIG00000018036 I
cxxc4 Takifugu rubripes ENSTRUG00000004403 I
cxxc5a Takifugu rubripes ENSTRUG00000017014 I
ENSTRUG00000017756 Takifugu rubripes ENSTRUG00000017756 I
CXXC5 Tursiops truncatus ENSTTRG00000003771 I
CXXC4 Tursiops truncatus ENSTTRG00000011432 I
ENSVPAG00000010751 Vicugna pacos ENSVPAG00000010751 I
ENSXMAG00000005442 Xiphophorus maculatus ENSXMAG00000005442 I
ENSXMAG00000011127 Xiphophorus maculatus ENSXMAG00000011127 I
Gfo_R011184 Geospiza fortis Gfo_R011184 I
Myotis_brandtii_cxxc4_10005165 Myotis brandtii Myotis_brandtii_cxxc4_10005165 I
Myotis_brandtii_Cxxc4_10030627 Myotis brandtii Myotis_brandtii_Cxxc4_10030627 I
Myotis_brandtii_CXXC5_10027816 Myotis brandtii Myotis_brandtii_CXXC5_10027816 I
Ogr13317 Ophisaurus gracilis Ogr13317 I
Pvit_06919 Pogona vitticeps Pvit_06919 I
Pvit_12827 Pogona vitticeps Pvit_12827 I
Sakowv30045758m.g Saccoglossus kowalevskii Sakowv30045758m.g I
cxxc4 Xenopus tropicalis XB-GENE-479477 I