TRIVIDRAFT_34449 (Trichoderma virens)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 TRIVIDRAFT_34449 T318835_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX1
M00066_2.00 		Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN		 PBM
Badis et al.(2008)
RFX1_4537 		0.673 0.500
RFX1
M07494_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1 		0.673 0.500
RFX1
M08600_2.00 		Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG		 Misc
DeBoer et al.(2011)
YLR176C_1478 		0.673 0.500
RFX1
M08601_2.00 		Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV		 Misc
DeBoer et al.(2011)
YLR176C_496 		0.673 0.500
RFX1
M11251_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$RFX1_02 		0.673 0.500
daf-19
M00709_2.00 		Caenorhabditis elegans
SGTTRCTADG
CHTAGYAACS		 PBM
Narasimhan et al.(2015)
pTH10021 		0.658 0.449
RFX2
M02449_2.00 		Homo sapiens
BGTHRYYADG
CHTRRYDACV		 PBM
Weirauch et al.(2014)
pTH9194 		0.653 0.397
RFX2
M02450_2.00 		Ornithorhynchus anatinus
NGTHRYYANV
BNTRRYDACN		 PBM
Weirauch et al.(2014)
pTH9269 		0.653 0.397
G4VLF2_SCHMA
M02452_2.00 		Schistosoma mansoni
GTTGCTAD
HTAGCAAC		 PBM
Weirauch et al.(2014)
pTH8587 		0.651 0.397
Sjc_0102030
M02455_2.00 		Schistosoma japonicum
GTTRCYANG
CNTRGYAAC		 PBM
Weirauch et al.(2014)
pTH9285 		0.651 0.397
Rfx3
M00188_2.00 		Mus musculus
SNTRRHDACN
NGTHDYYANS		 PBM
Badis et al.(2009)
Rfx3_3961 		0.651 0.385
Rfx3
M03463_2.00 		Mus musculus
SGTTRCCATGGYAACS
SGTTRCCATGGYAACS		 SELEX
Jolma et al.(2013)
Rfx3_1 		0.651 0.385
Rfx3
M09368_2.00 		Mus musculus
BBGTTGCCATGGNRAC
GTYNCCATGGCAACVV		 Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C 		0.651 0.385
XP_002157607.1
M02456_2.00 		Hydra magnipapillata
GTHDYYDNVN
NBNHRRHDAC		 PBM
Weirauch et al.(2014)
pTH9199 		0.651 0.410
RFX2
M03454_2.00 		Homo sapiens
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
RFX2_1 		0.651 0.397
RFX2
M03455_2.00 		Homo sapiens
SGTTGCTARGCAACS
SGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
RFX2_2 		0.651 0.397
Rfx2
M03461_2.00 		Mus musculus
BGTTRCCATGGYAACV
BGTTRCCATGGYAACV		 SELEX
Jolma et al.(2013)
Rfx2_1 		0.651 0.397
Rfx2
M03462_2.00 		Mus musculus
SGTTGCTARGCAACV
BGTTGCYTAGCAACS		 SELEX
Jolma et al.(2013)
Rfx2_2 		0.651 0.397
RFX2
M05719_2.00 		Homo sapiens
NGTWDYYATRRHWACN
NGTWDYYATRRHWACN		 SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX 		0.651 0.397
Rfx2
M05888_2.00 		Mus musculus
NGTTRCYATGGHDAY
RTHDCCATRGYAACN		 SMiLE-seq
Isakova et al.(2017)
RFX2 		0.651 0.397
RFX2
M09362_2.00 		Homo sapiens
YNGTTGCCATGGVRACVV
BBGTYBCCATGGCAACNR		 Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A 		0.651 0.397
Rfx2
M09366_2.00 		Mus musculus
NBYBGTYNCCMTGGCAACNSSS
SSSNGTTGCCAKGGNRACVRVN		 Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A 		0.651 0.397
RFX2
M09628_2.00 		Homo sapiens
BGTTKCCATGGMAAC
GTTKCCATGGMAACV		 Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402 		0.651 0.397
RFX2
M05720_2.00 		Homo sapiens
BGTTRCCATGRYAACV
BGTTRYCATGGYAACV		 SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX 		0.651 0.397
RFX1
M02447_2.00 		Anolis carolinensis
GTHRCYANGN
NCNTRGYDAC		 PBM
Weirauch et al.(2014)
pTH9223 		0.651 0.385
RFX1
M02451_2.00 		Tetraodon nigroviridis
GTHDYYANGN
NCNTRRHDAC		 PBM
Weirauch et al.(2014)
pTH9385 		0.651 0.385
RFX1
M05723_2.00 		Homo sapiens
BGTTRYCATGRYAACV
BGTTRYCATGRYAACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX 		0.651 0.385
Rfx1
M08162_2.00 		Mus musculus
GTTGCYADGGNRAC
GTYNCCHTRGCAAC		 ChIP-seq
Mathelier et al.(2014)
MA0509.1 		0.651 0.385
RFX1
M09363_2.00 		Homo sapiens
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B 		0.651 0.385
Rfx1
M09367_2.00 		Mus musculus
BBBSSNGTTGCCADGGNRMCVV
BBGKYNCCHTGGCAACNSSVVV		 Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A 		0.651 0.385
RFX1
M11245_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EFC_Q6 		0.651 0.385
RFX1
M11246_2.00 		Homo sapiens
HNGTTRCYWVGYDMYNN
NNRKHRCBWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_01 		0.651 0.385
RFX1
M11247_2.00 		Homo sapiens
HNGTTRCYWBVGYDMYNN
NNRKHRCBVWRGYAACND		 Transfac
Matys et al.(2006)
V$RFX1_02 		0.651 0.385
RFX1
M11248_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX1_Q6 		0.651 0.385
RFX1
M05724_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX 		0.651 0.385
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EHK27447 RFX 192 269

Links

Other RFX family TFs
Other Trichoderma virens TFs

383 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R012086 Calypte anna Aan_R012086 N
ACYPI001652 Acyrthosiphon pisum ACYPI001652 N
Afo_R008073 Aptenodytes forsteri Afo_R008073 N
Brh_R000244 Buceros rhinoceros Brh_R000244 N
Cmyd_10014175 Chelonia mydas Cmyd_10014175 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I
ENSAMEG00000000632 Ailuropoda melanoleuca ENSAMEG00000000632 I
ENSAMEG00000014183 Ailuropoda melanoleuca ENSAMEG00000014183 I
TEAD3 Bos taurus ENSBTAG00000019495 I
TEAD3 Canis familiaris ENSCAFG00000001326 I
TEAD2 Callithrix jacchus ENSCJAG00000000104 I
TEAD4 Callithrix jacchus ENSCJAG00000023239 I
TEAD2 Cavia porcellus ENSCPOG00000011572 I
ENSCSAG00000002642 Chlorocebus sabaeus ENSCSAG00000002642 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
tead1a Danio rerio ENSDARG00000028159 I
tead1b Danio rerio ENSDARG00000059483 I
tead3b Danio rerio ENSDARG00000063649 I
tead3a Danio rerio ENSDARG00000074321 N
TEAD3 Dasypus novemcinctus ENSDNOG00000023623 I
TEAD4 Dasypus novemcinctus ENSDNOG00000030589 I
TEAD4 Equus caballus ENSECAG00000011303 I
TEAD3 Equus caballus ENSECAG00000015056 I
TEAD2 Equus caballus ENSECAG00000018010 I
TEAD3 Felis catus ENSFCAG00000012905 I
TEAD3 Homo sapiens ENSG00000007866 D
TEAD4 Homo sapiens ENSG00000197905 D
tead3b Gasterosteus aculeatus ENSGACG00000005144 N
tead3a Gasterosteus aculeatus ENSGACG00000009758 I
ENSGALG00000000953 Gallus gallus ENSGALG00000000953 I
TEAD3 Gorilla gorilla ENSGGOG00000001847 I
TEAD2 Gorilla gorilla ENSGGOG00000016367 I
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
TEAD4 Loxodonta africana ENSLAFG00000006998 I
TEAD3 Loxodonta africana ENSLAFG00000014818 I
TEAD2 Loxodonta africana ENSLAFG00000016184 I
TEAD1 Loxodonta africana ENSLAFG00000016484 I
ENSLOCG00000016688 Lepisosteus oculatus ENSLOCG00000016688 I
ENSMGAG00000000674 Meleagris gallopavo ENSMGAG00000000674 N
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I
TEAD4 Microcebus murinus ENSMICG00000000108 I
TEAD2 Macaca mulatta ENSMMUG00000014791 I
ENSMMUP00000031528 Macaca fascicularis ENSMMUP00000031528 I
ENSMPUG00000003624 Mustela putorius furo ENSMPUG00000003624 I
Tead3 Mus musculus ENSMUSG00000002249 N
Tead4 Mus musculus ENSMUSG00000030353 D
Tead2 Mus musculus ENSMUSG00000030796 D
ENSNLEG00000005091 Nomascus leucogenys ENSNLEG00000005091 I
TEAD2 Ornithorhynchus anatinus ENSOANG00000013933 N
ENSOARG00000012126 Ovis aries ENSOARG00000012126 I
TEAD3 Oryctolagus cuniculus ENSOCUG00000004072 I
ENSOCUG00000015389 Oryctolagus cuniculus ENSOCUG00000015389 I
ENSONIG00000014698 Oreochromis niloticus ENSONIG00000014698 I
TEAD4 Oryzias latipes ENSORLG00000002553 I
tead3b Oryzias latipes ENSORLG00000006370 N
ENSP00000310701-D4 Bos grunniens ENSP00000310701-D4 I
TEAD2 Procavia capensis ENSPCAG00000003576 I
ENSPFOG00000013997 Poecilia formosa ENSPFOG00000013997 I
ENSPPYG00000010243 Pongo abelii ENSPPYG00000010243 I
TEAD2 Pan troglodytes ENSPTRG00000011290 I
TEAD4 Pteropus vampyrus ENSPVAG00000013230 I
Tead3 Rattus norvegicus ENSRNOG00000000506 I
Tead2 Rattus norvegicus ENSRNOG00000020695 I
ENSSARG00000008050 Sorex araneus ENSSARG00000008050 N
ENSSHAG00000011218 Sarcophilus harrisii ENSSHAG00000011218 I
ENSSHAG00000012780 Sarcophilus harrisii ENSSHAG00000012780 I
TEAD4 Sus scrofa ENSSSCG00000000736 I
TEAD3 Sus scrofa ENSSSCG00000001544 I
ENSSTOG00000010621 Ictidomys tridecemlineatus ENSSTOG00000010621 I
ENSSTOG00000012695 Ictidomys tridecemlineatus ENSSTOG00000012695 I
ENSSTOG00000024296 Ictidomys tridecemlineatus ENSSTOG00000024296 I
TEAD3 Taeniopygia guttata ENSTGUG00000001691 I
TEAD4 Tetraodon nigroviridis ENSTNIG00000003414 N
tead3b Tetraodon nigroviridis ENSTNIG00000018296 N
tead1a Takifugu rubripes ENSTRUG00000005940 I
tead3a Takifugu rubripes ENSTRUG00000011546 I
tead3b Takifugu rubripes ENSTRUG00000018177 I
ENSXMAG00000008189 Xiphophorus maculatus ENSXMAG00000008189 I
ENSXMAG00000018099 Xiphophorus maculatus ENSXMAG00000018099 N
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
Gfo_R008443 Geospiza fortis Gfo_R008443 N
Myotis_brandtii_TEAD2_10017641 Myotis brandtii Myotis_brandtii_TEAD2_10017641 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
Pvit_04865 Pogona vitticeps Pvit_04865 I